HW8 Complete

This commit is contained in:
2020-03-25 22:08:20 -06:00
parent 117ffcb5fb
commit 02d74cfd9a
4003 changed files with 1124519 additions and 1 deletions

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import hashlib
import os
import sys
from docutils import nodes
from docutils.parsers.rst import Directive, directives
import sphinx
from matplotlib import rcParams
from matplotlib import cbook
from matplotlib.mathtext import MathTextParser
rcParams['mathtext.fontset'] = 'cm'
mathtext_parser = MathTextParser("Bitmap")
# Define LaTeX math node:
class latex_math(nodes.General, nodes.Element):
pass
def fontset_choice(arg):
return directives.choice(arg, ['cm', 'stix', 'stixsans'])
def math_role(role, rawtext, text, lineno, inliner,
options={}, content=[]):
i = rawtext.find('`')
latex = rawtext[i+1:-1]
node = latex_math(rawtext)
node['latex'] = latex
node['fontset'] = options.get('fontset', 'cm')
return [node], []
math_role.options = {'fontset': fontset_choice}
@cbook.deprecated("3.1", alternative="MathDirective")
def math_directive(name, arguments, options, content, lineno,
content_offset, block_text, state, state_machine):
latex = ''.join(content)
node = latex_math(block_text)
node['latex'] = latex
node['fontset'] = options.get('fontset', 'cm')
return [node]
class MathDirective(Directive):
has_content = True
required_arguments = 0
optional_arguments = 0
final_argument_whitespace = False
option_spec = {'fontset': fontset_choice}
def run(self):
latex = ''.join(self.content)
node = latex_math(self.block_text)
node['latex'] = latex
node['fontset'] = self.options.get('fontset', 'cm')
return [node]
# This uses mathtext to render the expression
def latex2png(latex, filename, fontset='cm'):
latex = "$%s$" % latex
orig_fontset = rcParams['mathtext.fontset']
rcParams['mathtext.fontset'] = fontset
if os.path.exists(filename):
depth = mathtext_parser.get_depth(latex, dpi=100)
else:
try:
depth = mathtext_parser.to_png(filename, latex, dpi=100)
except Exception:
cbook._warn_external("Could not render math expression %s" % latex,
Warning)
depth = 0
rcParams['mathtext.fontset'] = orig_fontset
sys.stdout.write("#")
sys.stdout.flush()
return depth
# LaTeX to HTML translation stuff:
def latex2html(node, source):
inline = isinstance(node.parent, nodes.TextElement)
latex = node['latex']
name = 'math-%s' % hashlib.md5(latex.encode()).hexdigest()[-10:]
destdir = os.path.join(setup.app.builder.outdir, '_images', 'mathmpl')
if not os.path.exists(destdir):
os.makedirs(destdir)
dest = os.path.join(destdir, '%s.png' % name)
path = '/'.join((setup.app.builder.imgpath, 'mathmpl'))
depth = latex2png(latex, dest, node['fontset'])
if inline:
cls = ''
else:
cls = 'class="center" '
if inline and depth != 0:
style = 'style="position: relative; bottom: -%dpx"' % (depth + 1)
else:
style = ''
return '<img src="%s/%s.png" %s%s/>' % (path, name, cls, style)
def setup(app):
setup.app = app
# Add visit/depart methods to HTML-Translator:
def visit_latex_math_html(self, node):
source = self.document.attributes['source']
self.body.append(latex2html(node, source))
def depart_latex_math_html(self, node):
pass
# Add visit/depart methods to LaTeX-Translator:
def visit_latex_math_latex(self, node):
inline = isinstance(node.parent, nodes.TextElement)
if inline:
self.body.append('$%s$' % node['latex'])
else:
self.body.extend(['\\begin{equation}',
node['latex'],
'\\end{equation}'])
def depart_latex_math_latex(self, node):
pass
app.add_node(latex_math,
html=(visit_latex_math_html, depart_latex_math_html),
latex=(visit_latex_math_latex, depart_latex_math_latex))
app.add_role('mathmpl', math_role)
app.add_directive('mathmpl', MathDirective)
if sphinx.version_info < (1, 8):
app.add_role('math', math_role)
app.add_directive('math', MathDirective)
metadata = {'parallel_read_safe': True, 'parallel_write_safe': True}
return metadata

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"""
A directive for including a matplotlib plot in a Sphinx document.
By default, in HTML output, `plot` will include a .png file with a
link to a high-res .png and .pdf. In LaTeX output, it will include a
.pdf.
The source code for the plot may be included in one of three ways:
1. **A path to a source file** as the argument to the directive::
.. plot:: path/to/plot.py
When a path to a source file is given, the content of the
directive may optionally contain a caption for the plot::
.. plot:: path/to/plot.py
This is the caption for the plot
Additionally, one may specify the name of a function to call (with
no arguments) immediately after importing the module::
.. plot:: path/to/plot.py plot_function1
2. Included as **inline content** to the directive::
.. plot::
import matplotlib.pyplot as plt
import matplotlib.image as mpimg
import numpy as np
img = mpimg.imread('_static/stinkbug.png')
imgplot = plt.imshow(img)
3. Using **doctest** syntax::
.. plot::
A plotting example:
>>> import matplotlib.pyplot as plt
>>> plt.plot([1,2,3], [4,5,6])
Options
-------
The ``plot`` directive supports the following options:
format : {'python', 'doctest'}
Specify the format of the input
include-source : bool
Whether to display the source code. The default can be changed
using the `plot_include_source` variable in conf.py
encoding : str
If this source file is in a non-UTF8 or non-ASCII encoding,
the encoding must be specified using the `:encoding:` option.
The encoding will not be inferred using the ``-*- coding -*-``
metacomment.
context : bool or str
If provided, the code will be run in the context of all
previous plot directives for which the `:context:` option was
specified. This only applies to inline code plot directives,
not those run from files. If the ``:context: reset`` option is
specified, the context is reset for this and future plots, and
previous figures are closed prior to running the code.
``:context:close-figs`` keeps the context but closes previous figures
before running the code.
nofigs : bool
If specified, the code block will be run, but no figures will
be inserted. This is usually useful with the ``:context:``
option.
Additionally, this directive supports all of the options of the
`image` directive, except for `target` (since plot will add its own
target). These include `alt`, `height`, `width`, `scale`, `align` and
`class`.
Configuration options
---------------------
The plot directive has the following configuration options:
plot_include_source
Default value for the include-source option
plot_html_show_source_link
Whether to show a link to the source in HTML.
plot_pre_code
Code that should be executed before each plot. If not specified or None
it will default to a string containing::
import numpy as np
from matplotlib import pyplot as plt
plot_basedir
Base directory, to which ``plot::`` file names are relative
to. (If None or empty, file names are relative to the
directory where the file containing the directive is.)
plot_formats
File formats to generate. List of tuples or strings::
[(suffix, dpi), suffix, ...]
that determine the file format and the DPI. For entries whose
DPI was omitted, sensible defaults are chosen. When passing from
the command line through sphinx_build the list should be passed as
suffix:dpi,suffix:dpi, ....
plot_html_show_formats
Whether to show links to the files in HTML.
plot_rcparams
A dictionary containing any non-standard rcParams that should
be applied before each plot.
plot_apply_rcparams
By default, rcParams are applied when `context` option is not used in
a plot directive. This configuration option overrides this behavior
and applies rcParams before each plot.
plot_working_directory
By default, the working directory will be changed to the directory of
the example, so the code can get at its data files, if any. Also its
path will be added to `sys.path` so it can import any helper modules
sitting beside it. This configuration option can be used to specify
a central directory (also added to `sys.path`) where data files and
helper modules for all code are located.
plot_template
Provide a customized template for preparing restructured text.
"""
import contextlib
from io import StringIO
import itertools
import os
from os.path import relpath
from pathlib import Path
import re
import shutil
import sys
import textwrap
import traceback
import warnings
from docutils.parsers.rst import directives, Directive
from docutils.parsers.rst.directives.images import Image
import jinja2 # Sphinx dependency.
import matplotlib
from matplotlib.backend_bases import FigureManagerBase
try:
with warnings.catch_warnings(record=True):
warnings.simplefilter("error", UserWarning)
matplotlib.use('Agg')
except UserWarning:
import matplotlib.pyplot as plt
plt.switch_backend("Agg")
else:
import matplotlib.pyplot as plt
from matplotlib import _pylab_helpers, cbook
align = Image.align
__version__ = 2
# -----------------------------------------------------------------------------
# Registration hook
# -----------------------------------------------------------------------------
@cbook.deprecated("3.1", alternative="PlotDirective")
def plot_directive(name, arguments, options, content, lineno,
content_offset, block_text, state, state_machine):
"""Implementation of the ``.. plot::`` directive.
See the module docstring for details.
"""
return run(arguments, content, options, state_machine, state, lineno)
def _option_boolean(arg):
if not arg or not arg.strip():
# no argument given, assume used as a flag
return True
elif arg.strip().lower() in ('no', '0', 'false'):
return False
elif arg.strip().lower() in ('yes', '1', 'true'):
return True
else:
raise ValueError('"%s" unknown boolean' % arg)
def _option_context(arg):
if arg in [None, 'reset', 'close-figs']:
return arg
raise ValueError("argument should be None or 'reset' or 'close-figs'")
def _option_format(arg):
return directives.choice(arg, ('python', 'doctest'))
def _option_align(arg):
return directives.choice(arg, ("top", "middle", "bottom", "left", "center",
"right"))
def mark_plot_labels(app, document):
"""
To make plots referenceable, we need to move the reference from
the "htmlonly" (or "latexonly") node to the actual figure node
itself.
"""
for name, explicit in document.nametypes.items():
if not explicit:
continue
labelid = document.nameids[name]
if labelid is None:
continue
node = document.ids[labelid]
if node.tagname in ('html_only', 'latex_only'):
for n in node:
if n.tagname == 'figure':
sectname = name
for c in n:
if c.tagname == 'caption':
sectname = c.astext()
break
node['ids'].remove(labelid)
node['names'].remove(name)
n['ids'].append(labelid)
n['names'].append(name)
document.settings.env.labels[name] = \
document.settings.env.docname, labelid, sectname
break
class PlotDirective(Directive):
"""Implementation of the ``.. plot::`` directive.
See the module docstring for details.
"""
has_content = True
required_arguments = 0
optional_arguments = 2
final_argument_whitespace = False
option_spec = {
'alt': directives.unchanged,
'height': directives.length_or_unitless,
'width': directives.length_or_percentage_or_unitless,
'scale': directives.nonnegative_int,
'align': _option_align,
'class': directives.class_option,
'include-source': _option_boolean,
'format': _option_format,
'context': _option_context,
'nofigs': directives.flag,
'encoding': directives.encoding,
}
def run(self):
"""Run the plot directive."""
return run(self.arguments, self.content, self.options,
self.state_machine, self.state, self.lineno)
def setup(app):
import matplotlib
setup.app = app
setup.config = app.config
setup.confdir = app.confdir
app.add_directive('plot', PlotDirective)
app.add_config_value('plot_pre_code', None, True)
app.add_config_value('plot_include_source', False, True)
app.add_config_value('plot_html_show_source_link', True, True)
app.add_config_value('plot_formats', ['png', 'hires.png', 'pdf'], True)
app.add_config_value('plot_basedir', None, True)
app.add_config_value('plot_html_show_formats', True, True)
app.add_config_value('plot_rcparams', {}, True)
app.add_config_value('plot_apply_rcparams', False, True)
app.add_config_value('plot_working_directory', None, True)
app.add_config_value('plot_template', None, True)
app.connect('doctree-read', mark_plot_labels)
metadata = {'parallel_read_safe': True, 'parallel_write_safe': True,
'version': matplotlib.__version__}
return metadata
# -----------------------------------------------------------------------------
# Doctest handling
# -----------------------------------------------------------------------------
def contains_doctest(text):
try:
# check if it's valid Python as-is
compile(text, '<string>', 'exec')
return False
except SyntaxError:
pass
r = re.compile(r'^\s*>>>', re.M)
m = r.search(text)
return bool(m)
def unescape_doctest(text):
"""
Extract code from a piece of text, which contains either Python code
or doctests.
"""
if not contains_doctest(text):
return text
code = ""
for line in text.split("\n"):
m = re.match(r'^\s*(>>>|\.\.\.) (.*)$', line)
if m:
code += m.group(2) + "\n"
elif line.strip():
code += "# " + line.strip() + "\n"
else:
code += "\n"
return code
def split_code_at_show(text):
"""Split code at plt.show()."""
parts = []
is_doctest = contains_doctest(text)
part = []
for line in text.split("\n"):
if (not is_doctest and line.strip() == 'plt.show()') or \
(is_doctest and line.strip() == '>>> plt.show()'):
part.append(line)
parts.append("\n".join(part))
part = []
else:
part.append(line)
if "\n".join(part).strip():
parts.append("\n".join(part))
return parts
def remove_coding(text):
r"""Remove the coding comment, which six.exec\_ doesn't like."""
cbook.warn_deprecated('3.0', name='remove_coding', removal='3.1')
sub_re = re.compile(r"^#\s*-\*-\s*coding:\s*.*-\*-$", flags=re.MULTILINE)
return sub_re.sub("", text)
# -----------------------------------------------------------------------------
# Template
# -----------------------------------------------------------------------------
TEMPLATE = """
{{ source_code }}
.. only:: html
{% if source_link or (html_show_formats and not multi_image) %}
(
{%- if source_link -%}
`Source code <{{ source_link }}>`__
{%- endif -%}
{%- if html_show_formats and not multi_image -%}
{%- for img in images -%}
{%- for fmt in img.formats -%}
{%- if source_link or not loop.first -%}, {% endif -%}
`{{ fmt }} <{{ dest_dir }}/{{ img.basename }}.{{ fmt }}>`__
{%- endfor -%}
{%- endfor -%}
{%- endif -%}
)
{% endif %}
{% for img in images %}
.. figure:: {{ build_dir }}/{{ img.basename }}.{{ default_fmt }}
{% for option in options -%}
{{ option }}
{% endfor %}
{% if html_show_formats and multi_image -%}
(
{%- for fmt in img.formats -%}
{%- if not loop.first -%}, {% endif -%}
`{{ fmt }} <{{ dest_dir }}/{{ img.basename }}.{{ fmt }}>`__
{%- endfor -%}
)
{%- endif -%}
{{ caption }}
{% endfor %}
.. only:: not html
{% for img in images %}
.. figure:: {{ build_dir }}/{{ img.basename }}.*
{% for option in options -%}
{{ option }}
{% endfor %}
{{ caption }}
{% endfor %}
"""
exception_template = """
.. only:: html
[`source code <%(linkdir)s/%(basename)s.py>`__]
Exception occurred rendering plot.
"""
# the context of the plot for all directives specified with the
# :context: option
plot_context = dict()
class ImageFile(object):
def __init__(self, basename, dirname):
self.basename = basename
self.dirname = dirname
self.formats = []
def filename(self, format):
return os.path.join(self.dirname, "%s.%s" % (self.basename, format))
def filenames(self):
return [self.filename(fmt) for fmt in self.formats]
def out_of_date(original, derived):
"""
Return whether *derived* is out-of-date relative to *original*, both of
which are full file paths.
"""
return (not os.path.exists(derived) or
(os.path.exists(original) and
os.stat(derived).st_mtime < os.stat(original).st_mtime))
class PlotError(RuntimeError):
pass
def run_code(code, code_path, ns=None, function_name=None):
"""
Import a Python module from a path, and run the function given by
name, if function_name is not None.
"""
# Change the working directory to the directory of the example, so
# it can get at its data files, if any. Add its path to sys.path
# so it can import any helper modules sitting beside it.
pwd = os.getcwd()
if setup.config.plot_working_directory is not None:
try:
os.chdir(setup.config.plot_working_directory)
except OSError as err:
raise OSError(str(err) + '\n`plot_working_directory` option in'
'Sphinx configuration file must be a valid '
'directory path')
except TypeError as err:
raise TypeError(str(err) + '\n`plot_working_directory` option in '
'Sphinx configuration file must be a string or '
'None')
elif code_path is not None:
dirname = os.path.abspath(os.path.dirname(code_path))
os.chdir(dirname)
with cbook._setattr_cm(
sys, argv=[code_path], path=[os.getcwd(), *sys.path]), \
contextlib.redirect_stdout(StringIO()):
try:
code = unescape_doctest(code)
if ns is None:
ns = {}
if not ns:
if setup.config.plot_pre_code is None:
exec('import numpy as np\n'
'from matplotlib import pyplot as plt\n', ns)
else:
exec(str(setup.config.plot_pre_code), ns)
if "__main__" in code:
ns['__name__'] = '__main__'
# Patch out non-interactive show() to avoid triggering a warning.
with cbook._setattr_cm(FigureManagerBase, show=lambda self: None):
exec(code, ns)
if function_name is not None:
exec(function_name + "()", ns)
except (Exception, SystemExit) as err:
raise PlotError(traceback.format_exc())
finally:
os.chdir(pwd)
return ns
def clear_state(plot_rcparams, close=True):
if close:
plt.close('all')
matplotlib.rc_file_defaults()
matplotlib.rcParams.update(plot_rcparams)
def get_plot_formats(config):
default_dpi = {'png': 80, 'hires.png': 200, 'pdf': 200}
formats = []
plot_formats = config.plot_formats
for fmt in plot_formats:
if isinstance(fmt, str):
if ':' in fmt:
suffix, dpi = fmt.split(':')
formats.append((str(suffix), int(dpi)))
else:
formats.append((fmt, default_dpi.get(fmt, 80)))
elif isinstance(fmt, (tuple, list)) and len(fmt) == 2:
formats.append((str(fmt[0]), int(fmt[1])))
else:
raise PlotError('invalid image format "%r" in plot_formats' % fmt)
return formats
def render_figures(code, code_path, output_dir, output_base, context,
function_name, config, context_reset=False,
close_figs=False):
"""
Run a pyplot script and save the images in *output_dir*.
Save the images under *output_dir* with file names derived from
*output_base*
"""
formats = get_plot_formats(config)
# -- Try to determine if all images already exist
code_pieces = split_code_at_show(code)
# Look for single-figure output files first
all_exists = True
img = ImageFile(output_base, output_dir)
for format, dpi in formats:
if out_of_date(code_path, img.filename(format)):
all_exists = False
break
img.formats.append(format)
if all_exists:
return [(code, [img])]
# Then look for multi-figure output files
results = []
all_exists = True
for i, code_piece in enumerate(code_pieces):
images = []
for j in itertools.count():
if len(code_pieces) > 1:
img = ImageFile('%s_%02d_%02d' % (output_base, i, j),
output_dir)
else:
img = ImageFile('%s_%02d' % (output_base, j), output_dir)
for format, dpi in formats:
if out_of_date(code_path, img.filename(format)):
all_exists = False
break
img.formats.append(format)
# assume that if we have one, we have them all
if not all_exists:
all_exists = (j > 0)
break
images.append(img)
if not all_exists:
break
results.append((code_piece, images))
if all_exists:
return results
# We didn't find the files, so build them
results = []
if context:
ns = plot_context
else:
ns = {}
if context_reset:
clear_state(config.plot_rcparams)
plot_context.clear()
close_figs = not context or close_figs
for i, code_piece in enumerate(code_pieces):
if not context or config.plot_apply_rcparams:
clear_state(config.plot_rcparams, close_figs)
elif close_figs:
plt.close('all')
run_code(code_piece, code_path, ns, function_name)
images = []
fig_managers = _pylab_helpers.Gcf.get_all_fig_managers()
for j, figman in enumerate(fig_managers):
if len(fig_managers) == 1 and len(code_pieces) == 1:
img = ImageFile(output_base, output_dir)
elif len(code_pieces) == 1:
img = ImageFile("%s_%02d" % (output_base, j), output_dir)
else:
img = ImageFile("%s_%02d_%02d" % (output_base, i, j),
output_dir)
images.append(img)
for format, dpi in formats:
try:
figman.canvas.figure.savefig(img.filename(format), dpi=dpi)
except Exception as err:
raise PlotError(traceback.format_exc())
img.formats.append(format)
results.append((code_piece, images))
if not context or config.plot_apply_rcparams:
clear_state(config.plot_rcparams, close=not context)
return results
def run(arguments, content, options, state_machine, state, lineno):
document = state_machine.document
config = document.settings.env.config
nofigs = 'nofigs' in options
formats = get_plot_formats(config)
default_fmt = formats[0][0]
options.setdefault('include-source', config.plot_include_source)
keep_context = 'context' in options
context_opt = None if not keep_context else options['context']
rst_file = document.attributes['source']
rst_dir = os.path.dirname(rst_file)
if len(arguments):
if not config.plot_basedir:
source_file_name = os.path.join(setup.app.builder.srcdir,
directives.uri(arguments[0]))
else:
source_file_name = os.path.join(setup.confdir, config.plot_basedir,
directives.uri(arguments[0]))
# If there is content, it will be passed as a caption.
caption = '\n'.join(content)
# If the optional function name is provided, use it
if len(arguments) == 2:
function_name = arguments[1]
else:
function_name = None
code = Path(source_file_name).read_text(encoding='utf-8')
output_base = os.path.basename(source_file_name)
else:
source_file_name = rst_file
code = textwrap.dedent("\n".join(map(str, content)))
counter = document.attributes.get('_plot_counter', 0) + 1
document.attributes['_plot_counter'] = counter
base, ext = os.path.splitext(os.path.basename(source_file_name))
output_base = '%s-%d.py' % (base, counter)
function_name = None
caption = ''
base, source_ext = os.path.splitext(output_base)
if source_ext in ('.py', '.rst', '.txt'):
output_base = base
else:
source_ext = ''
# ensure that LaTeX includegraphics doesn't choke in foo.bar.pdf filenames
output_base = output_base.replace('.', '-')
# is it in doctest format?
is_doctest = contains_doctest(code)
if 'format' in options:
if options['format'] == 'python':
is_doctest = False
else:
is_doctest = True
# determine output directory name fragment
source_rel_name = relpath(source_file_name, setup.confdir)
source_rel_dir = os.path.dirname(source_rel_name)
while source_rel_dir.startswith(os.path.sep):
source_rel_dir = source_rel_dir[1:]
# build_dir: where to place output files (temporarily)
build_dir = os.path.join(os.path.dirname(setup.app.doctreedir),
'plot_directive',
source_rel_dir)
# get rid of .. in paths, also changes pathsep
# see note in Python docs for warning about symbolic links on Windows.
# need to compare source and dest paths at end
build_dir = os.path.normpath(build_dir)
if not os.path.exists(build_dir):
os.makedirs(build_dir)
# output_dir: final location in the builder's directory
dest_dir = os.path.abspath(os.path.join(setup.app.builder.outdir,
source_rel_dir))
if not os.path.exists(dest_dir):
os.makedirs(dest_dir) # no problem here for me, but just use built-ins
# how to link to files from the RST file
dest_dir_link = os.path.join(relpath(setup.confdir, rst_dir),
source_rel_dir).replace(os.path.sep, '/')
try:
build_dir_link = relpath(build_dir, rst_dir).replace(os.path.sep, '/')
except ValueError:
# on Windows, relpath raises ValueError when path and start are on
# different mounts/drives
build_dir_link = build_dir
source_link = dest_dir_link + '/' + output_base + source_ext
# make figures
try:
results = render_figures(code,
source_file_name,
build_dir,
output_base,
keep_context,
function_name,
config,
context_reset=context_opt == 'reset',
close_figs=context_opt == 'close-figs')
errors = []
except PlotError as err:
reporter = state.memo.reporter
sm = reporter.system_message(
2, "Exception occurred in plotting {}\n from {}:\n{}".format(
output_base, source_file_name, err),
line=lineno)
results = [(code, [])]
errors = [sm]
# Properly indent the caption
caption = '\n'.join(' ' + line.strip()
for line in caption.split('\n'))
# generate output restructuredtext
total_lines = []
for j, (code_piece, images) in enumerate(results):
if options['include-source']:
if is_doctest:
lines = ['', *code_piece.splitlines()]
else:
lines = ['.. code-block:: python', '',
*textwrap.indent(code_piece, ' ').splitlines()]
source_code = "\n".join(lines)
else:
source_code = ""
if nofigs:
images = []
opts = [
':%s: %s' % (key, val) for key, val in options.items()
if key in ('alt', 'height', 'width', 'scale', 'align', 'class')]
# Not-None src_link signals the need for a source link in the generated
# html
if j == 0 and config.plot_html_show_source_link:
src_link = source_link
else:
src_link = None
result = jinja2.Template(config.plot_template or TEMPLATE).render(
default_fmt=default_fmt,
dest_dir=dest_dir_link,
build_dir=build_dir_link,
source_link=src_link,
multi_image=len(images) > 1,
options=opts,
images=images,
source_code=source_code,
html_show_formats=config.plot_html_show_formats and len(images),
caption=caption)
total_lines.extend(result.split("\n"))
total_lines.extend("\n")
if total_lines:
state_machine.insert_input(total_lines, source=source_file_name)
# copy image files to builder's output directory, if necessary
Path(dest_dir).mkdir(parents=True, exist_ok=True)
for code_piece, images in results:
for img in images:
for fn in img.filenames():
destimg = os.path.join(dest_dir, os.path.basename(fn))
if fn != destimg:
shutil.copyfile(fn, destimg)
# copy script (if necessary)
Path(dest_dir, output_base + source_ext).write_text(
unescape_doctest(code) if source_file_name == rst_file else code,
encoding='utf-8')
return errors

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# Make tests a package

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from matplotlib.testing.conftest import (mpl_test_settings,
mpl_image_comparison_parameters,
pytest_configure, pytest_unconfigure)

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"""Tests for tinypages build using sphinx extensions."""
import filecmp
from os.path import join as pjoin, dirname, isdir
from subprocess import Popen, PIPE
import sys
import pytest
pytest.importorskip('sphinx')
def test_tinypages(tmpdir):
html_dir = pjoin(str(tmpdir), 'html')
doctree_dir = pjoin(str(tmpdir), 'doctrees')
# Build the pages with warnings turned into errors
cmd = [sys.executable, '-msphinx', '-W', '-b', 'html', '-d', doctree_dir,
pjoin(dirname(__file__), 'tinypages'), html_dir]
proc = Popen(cmd, stdout=PIPE, stderr=PIPE, universal_newlines=True)
out, err = proc.communicate()
assert proc.returncode == 0, \
"sphinx build failed with stdout:\n{}\nstderr:\n{}\n".format(out, err)
if err:
pytest.fail("sphinx build emitted the following warnings:\n{}"
.format(err))
assert isdir(html_dir)
def plot_file(num):
return pjoin(html_dir, 'some_plots-{0}.png'.format(num))
range_10, range_6, range_4 = [plot_file(i) for i in range(1, 4)]
# Plot 5 is range(6) plot
assert filecmp.cmp(range_6, plot_file(5))
# Plot 7 is range(4) plot
assert filecmp.cmp(range_4, plot_file(7))
# Plot 11 is range(10) plot
assert filecmp.cmp(range_10, plot_file(11))
# Plot 12 uses the old range(10) figure and the new range(6) figure
assert filecmp.cmp(range_10, plot_file('12_00'))
assert filecmp.cmp(range_6, plot_file('12_01'))
# Plot 13 shows close-figs in action
assert filecmp.cmp(range_4, plot_file(13))
# Plot 14 has included source
with open(pjoin(html_dir, 'some_plots.html'), 'rb') as fobj:
html_contents = fobj.read()
assert b'# Only a comment' in html_contents
# check plot defined in external file.
assert filecmp.cmp(range_4, pjoin(html_dir, 'range4.png'))
assert filecmp.cmp(range_6, pjoin(html_dir, 'range6.png'))
# check if figure caption made it into html file
assert b'This is the caption for plot 15.' in html_contents

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##############################
Static directory for tinypages
##############################
We need this README file to make sure the ``_static`` directory gets created
in the installation. The tests check for warnings in builds, and, when the
``_static`` directory is absent, this raises a warning.

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# tinypages documentation build configuration file, created by
# sphinx-quickstart on Tue Mar 18 11:58:34 2014.
#
# This file is execfile()d with the current directory set to its
# containing dir.
#
# Note that not all possible configuration values are present in this
# autogenerated file.
#
# All configuration values have a default; values that are commented out
# serve to show the default.
import sys
from os.path import join as pjoin, abspath
import sphinx
from distutils.version import LooseVersion
# If extensions (or modules to document with autodoc) are in another directory,
# add these directories to sys.path here. If the directory is relative to the
# documentation root, use os.path.abspath to make it absolute, like shown here.
#sys.path.insert(0, os.path.abspath('.'))
sys.path.insert(0, abspath(pjoin('..', '..')))
# -- General configuration ------------------------------------------------
# If your documentation needs a minimal Sphinx version, state it here.
#needs_sphinx = '1.0'
# Add any Sphinx extension module names here, as strings. They can be
# extensions coming with Sphinx (named 'sphinx.ext.*') or your custom
# ones.
extensions = ['matplotlib.sphinxext.plot_directive']
# Add any paths that contain templates here, relative to this directory.
templates_path = ['_templates']
# The suffix of source filenames.
source_suffix = '.rst'
# The encoding of source files.
#source_encoding = 'utf-8-sig'
# The master toctree document.
master_doc = 'index'
# General information about the project.
project = 'tinypages'
copyright = '2014, Matplotlib developers'
# The version info for the project you're documenting, acts as replacement for
# |version| and |release|, also used in various other places throughout the
# built documents.
#
# The short X.Y version.
version = '0.1'
# The full version, including alpha/beta/rc tags.
release = '0.1'
# The language for content autogenerated by Sphinx. Refer to documentation
# for a list of supported languages.
#language = None
# There are two options for replacing |today|: either, you set today to some
# non-false value, then it is used:
#today = ''
# Else, today_fmt is used as the format for a strftime call.
#today_fmt = '%B %d, %Y'
# List of patterns, relative to source directory, that match files and
# directories to ignore when looking for source files.
exclude_patterns = ['_build']
# The reST default role (used for this markup: `text`) to use for all
# documents.
#default_role = None
# If true, '()' will be appended to :func: etc. cross-reference text.
#add_function_parentheses = True
# If true, the current module name will be prepended to all description
# unit titles (such as .. function::).
#add_module_names = True
# If true, sectionauthor and moduleauthor directives will be shown in the
# output. They are ignored by default.
#show_authors = False
# The name of the Pygments (syntax highlighting) style to use.
pygments_style = 'sphinx'
# A list of ignored prefixes for module index sorting.
#modindex_common_prefix = []
# If true, keep warnings as "system message" paragraphs in the built documents.
#keep_warnings = False
# -- Options for HTML output ----------------------------------------------
# The theme to use for HTML and HTML Help pages. See the documentation for
# a list of builtin themes.
if LooseVersion(sphinx.__version__) >= LooseVersion('1.3'):
html_theme = 'classic'
else:
html_theme = 'default'
# Theme options are theme-specific and customize the look and feel of a theme
# further. For a list of options available for each theme, see the
# documentation.
#html_theme_options = {}
# Add any paths that contain custom themes here, relative to this directory.
#html_theme_path = []
# The name for this set of Sphinx documents. If None, it defaults to
# "<project> v<release> documentation".
#html_title = None
# A shorter title for the navigation bar. Default is the same as html_title.
#html_short_title = None
# The name of an image file (relative to this directory) to place at the top
# of the sidebar.
#html_logo = None
# The name of an image file (within the static path) to use as favicon of the
# docs. This file should be a Windows icon file (.ico) being 16x16 or 32x32
# pixels large.
#html_favicon = None
# Add any paths that contain custom static files (such as style sheets) here,
# relative to this directory. They are copied after the builtin static files,
# so a file named "default.css" will overwrite the builtin "default.css".
html_static_path = ['_static']
# Add any extra paths that contain custom files (such as robots.txt or
# .htaccess) here, relative to this directory. These files are copied
# directly to the root of the documentation.
#html_extra_path = []
# If not '', a 'Last updated on:' timestamp is inserted at every page bottom,
# using the given strftime format.
#html_last_updated_fmt = '%b %d, %Y'
# If true, SmartyPants will be used to convert quotes and dashes to
# typographically correct entities.
#html_use_smartypants = True
# Custom sidebar templates, maps document names to template names.
#html_sidebars = {}
# Additional templates that should be rendered to pages, maps page names to
# template names.
#html_additional_pages = {}
# If false, no module index is generated.
#html_domain_indices = True
# If false, no index is generated.
#html_use_index = True
# If true, the index is split into individual pages for each letter.
#html_split_index = False
# If true, links to the reST sources are added to the pages.
#html_show_sourcelink = True
# If true, "Created using Sphinx" is shown in the HTML footer. Default is True.
#html_show_sphinx = True
# If true, "(C) Copyright ..." is shown in the HTML footer. Default is True.
#html_show_copyright = True
# If true, an OpenSearch description file will be output, and all pages will
# contain a <link> tag referring to it. The value of this option must be the
# base URL from which the finished HTML is served.
#html_use_opensearch = ''
# This is the file name suffix for HTML files (e.g. ".xhtml").
#html_file_suffix = None
# Output file base name for HTML help builder.
htmlhelp_basename = 'tinypagesdoc'
# -- Options for LaTeX output ---------------------------------------------
latex_elements = {
# The paper size ('letterpaper' or 'a4paper').
#'papersize': 'letterpaper',
# The font size ('10pt', '11pt' or '12pt').
#'pointsize': '10pt',
# Additional stuff for the LaTeX preamble.
#'preamble': '',
}
# Grouping the document tree into LaTeX files. List of tuples
# (source start file, target name, title,
# author, documentclass [howto, manual, or own class]).
latex_documents = [
('index', 'tinypages.tex', 'tinypages Documentation',
'Matplotlib developers', 'manual'),
]
# The name of an image file (relative to this directory) to place at the top of
# the title page.
#latex_logo = None
# For "manual" documents, if this is true, then toplevel headings are parts,
# not chapters.
#latex_use_parts = False
# If true, show page references after internal links.
#latex_show_pagerefs = False
# If true, show URL addresses after external links.
#latex_show_urls = False
# Documents to append as an appendix to all manuals.
#latex_appendices = []
# If false, no module index is generated.
#latex_domain_indices = True
# -- Options for manual page output ---------------------------------------
# One entry per manual page. List of tuples
# (source start file, name, description, authors, manual section).
man_pages = [
('index', 'tinypages', 'tinypages Documentation',
['Matplotlib developers'], 1)
]
# If true, show URL addresses after external links.
#man_show_urls = False
# -- Options for Texinfo output -------------------------------------------
# Grouping the document tree into Texinfo files. List of tuples
# (source start file, target name, title, author,
# dir menu entry, description, category)
texinfo_documents = [
('index', 'tinypages', 'tinypages Documentation',
'Matplotlib developers', 'tinypages', 'One line description of project.',
'Miscellaneous'),
]
# Documents to append as an appendix to all manuals.
#texinfo_appendices = []
# If false, no module index is generated.
#texinfo_domain_indices = True
# How to display URL addresses: 'footnote', 'no', or 'inline'.
#texinfo_show_urls = 'footnote'
# If true, do not generate a @detailmenu in the "Top" node's menu.
#texinfo_no_detailmenu = False

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.. tinypages documentation master file, created by
sphinx-quickstart on Tue Mar 18 11:58:34 2014.
You can adapt this file completely to your liking, but it should at least
contain the root `toctree` directive.
Welcome to tinypages's documentation!
=====================================
Contents:
.. toctree::
:maxdepth: 2
some_plots
Indices and tables
==================
* :ref:`genindex`
* :ref:`modindex`
* :ref:`search`

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from matplotlib import pyplot as plt
plt.figure()
plt.plot(range(4))
plt.show()

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from matplotlib import pyplot as plt
def range4():
'''This is never be called if plot_directive works as expected.'''
raise NotImplementedError
def range6():
'''This is the function that should be executed.'''
plt.figure()
plt.plot(range(6))
plt.show()

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##########
Some plots
##########
Plot 1 does not use context:
.. plot::
plt.plot(range(10))
a = 10
Plot 2 doesn't use context either; has length 6:
.. plot::
plt.plot(range(6))
Plot 3 has length 4:
.. plot::
plt.plot(range(4))
Plot 4 shows that a new block with context does not see the variable defined
in the no-context block:
.. plot::
:context:
assert 'a' not in globals()
Plot 5 defines ``a`` in a context block:
.. plot::
:context:
plt.plot(range(6))
a = 10
Plot 6 shows that a block with context sees the new variable. It also uses
``:nofigs:``:
.. plot::
:context:
:nofigs:
assert a == 10
b = 4
Plot 7 uses a variable previously defined in previous ``nofigs`` context. It
also closes any previous figures to create a fresh figure:
.. plot::
:context: close-figs
assert b == 4
plt.plot(range(b))
Plot 8 shows that a non-context block still doesn't have ``a``:
.. plot::
:nofigs:
assert 'a' not in globals()
Plot 9 has a context block, and does have ``a``:
.. plot::
:context:
:nofigs:
assert a == 10
Plot 10 resets context, and ``a`` has gone again:
.. plot::
:context: reset
:nofigs:
assert 'a' not in globals()
c = 10
Plot 11 continues the context, we have the new value, but not the old:
.. plot::
:context:
assert c == 10
assert 'a' not in globals()
plt.plot(range(c))
Plot 12 opens a new figure. By default the directive will plot both the first
and the second figure:
.. plot::
:context:
plt.figure()
plt.plot(range(6))
Plot 13 shows ``close-figs`` in action. ``close-figs`` closes all figures
previous to this plot directive, so we get always plot the figure we create in
the directive:
.. plot::
:context: close-figs
plt.figure()
plt.plot(range(4))
Plot 14 uses ``include-source``:
.. plot::
:include-source:
# Only a comment
Plot 15 uses an external file with the plot commands and a caption:
.. plot:: range4.py
This is the caption for plot 15.
Plot 16 uses a specific function in a file with plot commands:
.. plot:: range6.py range6