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How to Apply These Terms to Your New Programs
If you develop a new program, and you want it to be of the greatest
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To do so, attach the following notices to the program. It is safest
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state the exclusion of warranty; and each file should have at least
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<one line to give the program's name and a brief idea of what it does.>
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Also add information on how to contact you by electronic and paper mail.
If the program does terminal interaction, make it output a short
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<program> Copyright (C) <year> <name of author>
This program comes with ABSOLUTELY NO WARRANTY; for details type `show w'.
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under certain conditions; type `show c' for details.
The hypothetical commands `show w' and `show c' should show the appropriate
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You should also get your employer (if you work as a programmer) or school,
if any, to sign a "copyright disclaimer" for the program, if necessary.
For more information on this, and how to apply and follow the GNU GPL, see
<http://www.gnu.org/licenses/>.
The GNU General Public License does not permit incorporating your program
into proprietary programs. If your program is a subroutine library, you
may consider it more useful to permit linking proprietary applications with
the library. If this is what you want to do, use the GNU Lesser General
Public License instead of this License. But first, please read
<http://www.gnu.org/philosophy/why-not-lgpl.html>.

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@@ -0,0 +1,27 @@
The NumPy repository and source distributions bundle several libraries that are
compatibly licensed. We list these here.
Name: Numpydoc
Files: doc/sphinxext/numpydoc/*
License: 2-clause BSD
For details, see doc/sphinxext/LICENSE.txt
Name: scipy-sphinx-theme
Files: doc/scipy-sphinx-theme/*
License: 3-clause BSD, PSF and Apache 2.0
For details, see doc/scipy-sphinx-theme/LICENSE.txt
Name: lapack-lite
Files: numpy/linalg/lapack_lite/*
License: 3-clause BSD
For details, see numpy/linalg/lapack_lite/LICENSE.txt
Name: tempita
Files: tools/npy_tempita/*
License: BSD derived
For details, see tools/npy_tempita/license.txt
Name: dragon4
Files: numpy/core/src/multiarray/dragon4.c
License: MIT
For license text, see numpy/core/src/multiarray/dragon4.c

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@@ -0,0 +1,56 @@
Metadata-Version: 2.1
Name: numpy
Version: 1.18.1
Summary: NumPy is the fundamental package for array computing with Python.
Home-page: https://www.numpy.org
Author: Travis E. Oliphant et al.
Maintainer: NumPy Developers
Maintainer-email: numpy-discussion@python.org
License: BSD
Download-URL: https://pypi.python.org/pypi/numpy
Project-URL: Bug Tracker, https://github.com/numpy/numpy/issues
Project-URL: Documentation, https://docs.scipy.org/doc/numpy/
Project-URL: Source Code, https://github.com/numpy/numpy
Platform: Windows
Platform: Linux
Platform: Solaris
Platform: Mac OS-X
Platform: Unix
Classifier: Development Status :: 5 - Production/Stable
Classifier: Intended Audience :: Science/Research
Classifier: Intended Audience :: Developers
Classifier: License :: OSI Approved
Classifier: Programming Language :: C
Classifier: Programming Language :: Python
Classifier: Programming Language :: Python :: 3
Classifier: Programming Language :: Python :: 3.5
Classifier: Programming Language :: Python :: 3.6
Classifier: Programming Language :: Python :: 3.7
Classifier: Programming Language :: Python :: 3.8
Classifier: Programming Language :: Python :: 3 :: Only
Classifier: Programming Language :: Python :: Implementation :: CPython
Classifier: Topic :: Software Development
Classifier: Topic :: Scientific/Engineering
Classifier: Operating System :: Microsoft :: Windows
Classifier: Operating System :: POSIX
Classifier: Operating System :: Unix
Classifier: Operating System :: MacOS
Requires-Python: >=3.5
It provides:
- a powerful N-dimensional array object
- sophisticated (broadcasting) functions
- tools for integrating C/C++ and Fortran code
- useful linear algebra, Fourier transform, and random number capabilities
- and much more
Besides its obvious scientific uses, NumPy can also be used as an efficient
multi-dimensional container of generic data. Arbitrary data-types can be
defined. This allows NumPy to seamlessly and speedily integrate with a wide
variety of databases.
All NumPy wheels distributed on PyPI are BSD licensed.

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TERMS AND CONDITIONS
0. Definitions.
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Each time you convey a covered work, the recipient automatically
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You may not impose any further restrictions on the exercise of the
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11. Patents.
A "contributor" is a copyright holder who authorizes use under this
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work thus licensed is called the contributor's "contributor version".
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Nothing in this License shall be construed as excluding or limiting
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If conditions are imposed on you (whether by court order, agreement or
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Notwithstanding any other provision of this License, you have
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THERE IS NO WARRANTY FOR THE PROGRAM, TO THE EXTENT PERMITTED BY
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If the disclaimer of warranty and limitation of liability provided
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END OF TERMS AND CONDITIONS
How to Apply These Terms to Your New Programs
If you develop a new program, and you want it to be of the greatest
possible use to the public, the best way to achieve this is to make it
free software which everyone can redistribute and change under these terms.
To do so, attach the following notices to the program. It is safest
to attach them to the start of each source file to most effectively
state the exclusion of warranty; and each file should have at least
the "copyright" line and a pointer to where the full notice is found.
<one line to give the program's name and a brief idea of what it does.>
Copyright (C) <year> <name of author>
This program is free software: you can redistribute it and/or modify
it under the terms of the GNU General Public License as published by
the Free Software Foundation, either version 3 of the License, or
(at your option) any later version.
This program is distributed in the hope that it will be useful,
but WITHOUT ANY WARRANTY; without even the implied warranty of
MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
GNU General Public License for more details.
You should have received a copy of the GNU General Public License
along with this program. If not, see <http://www.gnu.org/licenses/>.
Also add information on how to contact you by electronic and paper mail.
If the program does terminal interaction, make it output a short
notice like this when it starts in an interactive mode:
<program> Copyright (C) <year> <name of author>
This program comes with ABSOLUTELY NO WARRANTY; for details type `show w'.
This is free software, and you are welcome to redistribute it
under certain conditions; type `show c' for details.
The hypothetical commands `show w' and `show c' should show the appropriate
parts of the General Public License. Of course, your program's commands
might be different; for a GUI interface, you would use an "about box".
You should also get your employer (if you work as a programmer) or school,
if any, to sign a "copyright disclaimer" for the program, if necessary.
For more information on this, and how to apply and follow the GNU GPL, see
<http://www.gnu.org/licenses/>.
The GNU General Public License does not permit incorporating your program
into proprietary programs. If your program is a subroutine library, you
may consider it more useful to permit linking proprietary applications with
the library. If this is what you want to do, use the GNU Lesser General
Public License instead of this License. But first, please read
<http://www.gnu.org/philosophy/why-not-lgpl.html>.

View File

@@ -0,0 +1,40 @@
# This file is generated by numpy's setup.py
# It contains system_info results at the time of building this package.
__all__ = ["get_info","show"]
import os
import sys
extra_dll_dir = os.path.join(os.path.dirname(__file__), '.libs')
if sys.platform == 'win32' and os.path.isdir(extra_dll_dir):
if sys.version_info >= (3, 8):
os.add_dll_directory(extra_dll_dir)
else:
os.environ.setdefault('PATH', '')
os.environ['PATH'] += os.pathsep + extra_dll_dir
blas_mkl_info={}
blis_info={}
openblas_info={'libraries': ['openblas', 'openblas'], 'library_dirs': ['/usr/local/lib'], 'language': 'c', 'define_macros': [('HAVE_CBLAS', None)]}
blas_opt_info={'libraries': ['openblas', 'openblas'], 'library_dirs': ['/usr/local/lib'], 'language': 'c', 'define_macros': [('HAVE_CBLAS', None)]}
lapack_mkl_info={}
openblas_lapack_info={'libraries': ['openblas', 'openblas'], 'library_dirs': ['/usr/local/lib'], 'language': 'c', 'define_macros': [('HAVE_CBLAS', None)]}
lapack_opt_info={'libraries': ['openblas', 'openblas'], 'library_dirs': ['/usr/local/lib'], 'language': 'c', 'define_macros': [('HAVE_CBLAS', None)]}
def get_info(name):
g = globals()
return g.get(name, g.get(name + "_info", {}))
def show():
for name,info_dict in globals().items():
if name[0] == "_" or type(info_dict) is not type({}): continue
print(name + ":")
if not info_dict:
print(" NOT AVAILABLE")
for k,v in info_dict.items():
v = str(v)
if k == "sources" and len(v) > 200:
v = v[:60] + " ...\n... " + v[-60:]
print(" %s = %s" % (k,v))

View File

@@ -0,0 +1,260 @@
"""
NumPy
=====
Provides
1. An array object of arbitrary homogeneous items
2. Fast mathematical operations over arrays
3. Linear Algebra, Fourier Transforms, Random Number Generation
How to use the documentation
----------------------------
Documentation is available in two forms: docstrings provided
with the code, and a loose standing reference guide, available from
`the NumPy homepage <https://www.scipy.org>`_.
We recommend exploring the docstrings using
`IPython <https://ipython.org>`_, an advanced Python shell with
TAB-completion and introspection capabilities. See below for further
instructions.
The docstring examples assume that `numpy` has been imported as `np`::
>>> import numpy as np
Code snippets are indicated by three greater-than signs::
>>> x = 42
>>> x = x + 1
Use the built-in ``help`` function to view a function's docstring::
>>> help(np.sort)
... # doctest: +SKIP
For some objects, ``np.info(obj)`` may provide additional help. This is
particularly true if you see the line "Help on ufunc object:" at the top
of the help() page. Ufuncs are implemented in C, not Python, for speed.
The native Python help() does not know how to view their help, but our
np.info() function does.
To search for documents containing a keyword, do::
>>> np.lookfor('keyword')
... # doctest: +SKIP
General-purpose documents like a glossary and help on the basic concepts
of numpy are available under the ``doc`` sub-module::
>>> from numpy import doc
>>> help(doc)
... # doctest: +SKIP
Available subpackages
---------------------
doc
Topical documentation on broadcasting, indexing, etc.
lib
Basic functions used by several sub-packages.
random
Core Random Tools
linalg
Core Linear Algebra Tools
fft
Core FFT routines
polynomial
Polynomial tools
testing
NumPy testing tools
f2py
Fortran to Python Interface Generator.
distutils
Enhancements to distutils with support for
Fortran compilers support and more.
Utilities
---------
test
Run numpy unittests
show_config
Show numpy build configuration
dual
Overwrite certain functions with high-performance Scipy tools
matlib
Make everything matrices.
__version__
NumPy version string
Viewing documentation using IPython
-----------------------------------
Start IPython with the NumPy profile (``ipython -p numpy``), which will
import `numpy` under the alias `np`. Then, use the ``cpaste`` command to
paste examples into the shell. To see which functions are available in
`numpy`, type ``np.<TAB>`` (where ``<TAB>`` refers to the TAB key), or use
``np.*cos*?<ENTER>`` (where ``<ENTER>`` refers to the ENTER key) to narrow
down the list. To view the docstring for a function, use
``np.cos?<ENTER>`` (to view the docstring) and ``np.cos??<ENTER>`` (to view
the source code).
Copies vs. in-place operation
-----------------------------
Most of the functions in `numpy` return a copy of the array argument
(e.g., `np.sort`). In-place versions of these functions are often
available as array methods, i.e. ``x = np.array([1,2,3]); x.sort()``.
Exceptions to this rule are documented.
"""
from __future__ import division, absolute_import, print_function
import sys
import warnings
from ._globals import ModuleDeprecationWarning, VisibleDeprecationWarning
from ._globals import _NoValue
# We first need to detect if we're being called as part of the numpy setup
# procedure itself in a reliable manner.
try:
__NUMPY_SETUP__
except NameError:
__NUMPY_SETUP__ = False
if __NUMPY_SETUP__:
sys.stderr.write('Running from numpy source directory.\n')
else:
try:
from numpy.__config__ import show as show_config
except ImportError:
msg = """Error importing numpy: you should not try to import numpy from
its source directory; please exit the numpy source tree, and relaunch
your python interpreter from there."""
raise ImportError(msg)
from .version import git_revision as __git_revision__
from .version import version as __version__
__all__ = ['ModuleDeprecationWarning',
'VisibleDeprecationWarning']
# Allow distributors to run custom init code
from . import _distributor_init
from . import core
from .core import *
from . import compat
from . import lib
# FIXME: why have numpy.lib if everything is imported here??
from .lib import *
from . import linalg
from . import fft
from . import polynomial
from . import random
from . import ctypeslib
from . import ma
from . import matrixlib as _mat
from .matrixlib import *
from .compat import long
# Make these accessible from numpy name-space
# but not imported in from numpy import *
# TODO[gh-6103]: Deprecate these
if sys.version_info[0] >= 3:
from builtins import bool, int, float, complex, object, str
unicode = str
else:
from __builtin__ import bool, int, float, complex, object, unicode, str
from .core import round, abs, max, min
# now that numpy modules are imported, can initialize limits
core.getlimits._register_known_types()
__all__.extend(['__version__', 'show_config'])
__all__.extend(core.__all__)
__all__.extend(_mat.__all__)
__all__.extend(lib.__all__)
__all__.extend(['linalg', 'fft', 'random', 'ctypeslib', 'ma'])
# These are added by `from .core import *` and `core.__all__`, but we
# overwrite them above with builtins we do _not_ want to export.
__all__.remove('long')
__all__.remove('unicode')
# Remove things that are in the numpy.lib but not in the numpy namespace
# Note that there is a test (numpy/tests/test_public_api.py:test_numpy_namespace)
# that prevents adding more things to the main namespace by accident.
# The list below will grow until the `from .lib import *` fixme above is
# taken care of
__all__.remove('Arrayterator')
del Arrayterator
# Filter out Cython harmless warnings
warnings.filterwarnings("ignore", message="numpy.dtype size changed")
warnings.filterwarnings("ignore", message="numpy.ufunc size changed")
warnings.filterwarnings("ignore", message="numpy.ndarray size changed")
# oldnumeric and numarray were removed in 1.9. In case some packages import
# but do not use them, we define them here for backward compatibility.
oldnumeric = 'removed'
numarray = 'removed'
if sys.version_info[:2] >= (3, 7):
# Importing Tester requires importing all of UnitTest which is not a
# cheap import Since it is mainly used in test suits, we lazy import it
# here to save on the order of 10 ms of import time for most users
#
# The previous way Tester was imported also had a side effect of adding
# the full `numpy.testing` namespace
#
# module level getattr is only supported in 3.7 onwards
# https://www.python.org/dev/peps/pep-0562/
def __getattr__(attr):
if attr == 'testing':
import numpy.testing as testing
return testing
elif attr == 'Tester':
from .testing import Tester
return Tester
else:
raise AttributeError("module {!r} has no attribute "
"{!r}".format(__name__, attr))
def __dir__():
return list(globals().keys()) + ['Tester', 'testing']
else:
# We don't actually use this ourselves anymore, but I'm not 100% sure that
# no-one else in the world is using it (though I hope not)
from .testing import Tester
# Pytest testing
from numpy._pytesttester import PytestTester
test = PytestTester(__name__)
del PytestTester
def _sanity_check():
"""
Quick sanity checks for common bugs caused by environment.
There are some cases e.g. with wrong BLAS ABI that cause wrong
results under specific runtime conditions that are not necessarily
achieved during test suite runs, and it is useful to catch those early.
See https://github.com/numpy/numpy/issues/8577 and other
similar bug reports.
"""
try:
x = ones(2, dtype=float32)
if not abs(x.dot(x) - 2.0) < 1e-5:
raise AssertionError()
except AssertionError:
msg = ("The current Numpy installation ({!r}) fails to "
"pass simple sanity checks. This can be caused for example "
"by incorrect BLAS library being linked in, or by mixing "
"package managers (pip, conda, apt, ...). Search closed "
"numpy issues for similar problems.")
raise RuntimeError(msg.format(__file__))
_sanity_check()
del _sanity_check

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""" Distributor init file
Distributors: you can add custom code here to support particular distributions
of numpy.
For example, this is a good place to put any checks for hardware requirements.
The numpy standard source distribution will not put code in this file, so you
can safely replace this file with your own version.
"""

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"""
Module defining global singleton classes.
This module raises a RuntimeError if an attempt to reload it is made. In that
way the identities of the classes defined here are fixed and will remain so
even if numpy itself is reloaded. In particular, a function like the following
will still work correctly after numpy is reloaded::
def foo(arg=np._NoValue):
if arg is np._NoValue:
...
That was not the case when the singleton classes were defined in the numpy
``__init__.py`` file. See gh-7844 for a discussion of the reload problem that
motivated this module.
"""
from __future__ import division, absolute_import, print_function
__ALL__ = [
'ModuleDeprecationWarning', 'VisibleDeprecationWarning', '_NoValue'
]
# Disallow reloading this module so as to preserve the identities of the
# classes defined here.
if '_is_loaded' in globals():
raise RuntimeError('Reloading numpy._globals is not allowed')
_is_loaded = True
class ModuleDeprecationWarning(DeprecationWarning):
"""Module deprecation warning.
The nose tester turns ordinary Deprecation warnings into test failures.
That makes it hard to deprecate whole modules, because they get
imported by default. So this is a special Deprecation warning that the
nose tester will let pass without making tests fail.
"""
ModuleDeprecationWarning.__module__ = 'numpy'
class VisibleDeprecationWarning(UserWarning):
"""Visible deprecation warning.
By default, python will not show deprecation warnings, so this class
can be used when a very visible warning is helpful, for example because
the usage is most likely a user bug.
"""
VisibleDeprecationWarning.__module__ = 'numpy'
class _NoValueType(object):
"""Special keyword value.
The instance of this class may be used as the default value assigned to a
deprecated keyword in order to check if it has been given a user defined
value.
"""
__instance = None
def __new__(cls):
# ensure that only one instance exists
if not cls.__instance:
cls.__instance = super(_NoValueType, cls).__new__(cls)
return cls.__instance
# needed for python 2 to preserve identity through a pickle
def __reduce__(self):
return (self.__class__, ())
def __repr__(self):
return "<no value>"
_NoValue = _NoValueType()

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"""
Pytest test running.
This module implements the ``test()`` function for NumPy modules. The usual
boiler plate for doing that is to put the following in the module
``__init__.py`` file::
from numpy._pytesttester import PytestTester
test = PytestTester(__name__).test
del PytestTester
Warnings filtering and other runtime settings should be dealt with in the
``pytest.ini`` file in the numpy repo root. The behavior of the test depends on
whether or not that file is found as follows:
* ``pytest.ini`` is present (develop mode)
All warnings except those explicily filtered out are raised as error.
* ``pytest.ini`` is absent (release mode)
DeprecationWarnings and PendingDeprecationWarnings are ignored, other
warnings are passed through.
In practice, tests run from the numpy repo are run in develop mode. That
includes the standard ``python runtests.py`` invocation.
This module is imported by every numpy subpackage, so lies at the top level to
simplify circular import issues. For the same reason, it contains no numpy
imports at module scope, instead importing numpy within function calls.
"""
from __future__ import division, absolute_import, print_function
import sys
import os
__all__ = ['PytestTester']
def _show_numpy_info():
import numpy as np
print("NumPy version %s" % np.__version__)
relaxed_strides = np.ones((10, 1), order="C").flags.f_contiguous
print("NumPy relaxed strides checking option:", relaxed_strides)
class PytestTester(object):
"""
Pytest test runner.
A test function is typically added to a package's __init__.py like so::
from numpy._pytesttester import PytestTester
test = PytestTester(__name__).test
del PytestTester
Calling this test function finds and runs all tests associated with the
module and all its sub-modules.
Attributes
----------
module_name : str
Full path to the package to test.
Parameters
----------
module_name : module name
The name of the module to test.
Notes
-----
Unlike the previous ``nose``-based implementation, this class is not
publicly exposed as it performs some ``numpy``-specific warning
suppression.
"""
def __init__(self, module_name):
self.module_name = module_name
def __call__(self, label='fast', verbose=1, extra_argv=None,
doctests=False, coverage=False, durations=-1, tests=None):
"""
Run tests for module using pytest.
Parameters
----------
label : {'fast', 'full'}, optional
Identifies the tests to run. When set to 'fast', tests decorated
with `pytest.mark.slow` are skipped, when 'full', the slow marker
is ignored.
verbose : int, optional
Verbosity value for test outputs, in the range 1-3. Default is 1.
extra_argv : list, optional
List with any extra arguments to pass to pytests.
doctests : bool, optional
.. note:: Not supported
coverage : bool, optional
If True, report coverage of NumPy code. Default is False.
Requires installation of (pip) pytest-cov.
durations : int, optional
If < 0, do nothing, If 0, report time of all tests, if > 0,
report the time of the slowest `timer` tests. Default is -1.
tests : test or list of tests
Tests to be executed with pytest '--pyargs'
Returns
-------
result : bool
Return True on success, false otherwise.
Notes
-----
Each NumPy module exposes `test` in its namespace to run all tests for
it. For example, to run all tests for numpy.lib:
>>> np.lib.test() #doctest: +SKIP
Examples
--------
>>> result = np.lib.test() #doctest: +SKIP
...
1023 passed, 2 skipped, 6 deselected, 1 xfailed in 10.39 seconds
>>> result
True
"""
import pytest
import warnings
#FIXME This is no longer needed? Assume it was for use in tests.
# cap verbosity at 3, which is equivalent to the pytest '-vv' option
#from . import utils
#verbose = min(int(verbose), 3)
#utils.verbose = verbose
#
module = sys.modules[self.module_name]
module_path = os.path.abspath(module.__path__[0])
# setup the pytest arguments
pytest_args = ["-l"]
# offset verbosity. The "-q" cancels a "-v".
pytest_args += ["-q"]
# Filter out distutils cpu warnings (could be localized to
# distutils tests). ASV has problems with top level import,
# so fetch module for suppression here.
with warnings.catch_warnings():
warnings.simplefilter("always")
from numpy.distutils import cpuinfo
# Filter out annoying import messages. Want these in both develop and
# release mode.
pytest_args += [
"-W ignore:Not importing directory",
"-W ignore:numpy.dtype size changed",
"-W ignore:numpy.ufunc size changed",
"-W ignore::UserWarning:cpuinfo",
]
# When testing matrices, ignore their PendingDeprecationWarnings
pytest_args += [
"-W ignore:the matrix subclass is not",
]
# Ignore python2.7 -3 warnings
pytest_args += [
r"-W ignore:sys\.exc_clear\(\) not supported in 3\.x:DeprecationWarning",
r"-W ignore:in 3\.x, __setslice__:DeprecationWarning",
r"-W ignore:in 3\.x, __getslice__:DeprecationWarning",
r"-W ignore:buffer\(\) not supported in 3\.x:DeprecationWarning",
r"-W ignore:CObject type is not supported in 3\.x:DeprecationWarning",
r"-W ignore:comparing unequal types not supported in 3\.x:DeprecationWarning",
r"-W ignore:the commands module has been removed in Python 3\.0:DeprecationWarning",
r"-W ignore:The 'new' module has been removed in Python 3\.0:DeprecationWarning",
]
if doctests:
raise ValueError("Doctests not supported")
if extra_argv:
pytest_args += list(extra_argv)
if verbose > 1:
pytest_args += ["-" + "v"*(verbose - 1)]
if coverage:
pytest_args += ["--cov=" + module_path]
if label == "fast":
pytest_args += ["-m", "not slow"]
elif label != "full":
pytest_args += ["-m", label]
if durations >= 0:
pytest_args += ["--durations=%s" % durations]
if tests is None:
tests = [self.module_name]
pytest_args += ["--pyargs"] + list(tests)
# run tests.
_show_numpy_info()
try:
code = pytest.main(pytest_args)
except SystemExit as exc:
code = exc.code
return code == 0

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"""
Compatibility module.
This module contains duplicated code from Python itself or 3rd party
extensions, which may be included for the following reasons:
* compatibility
* we may only need a small subset of the copied library/module
"""
from __future__ import division, absolute_import, print_function
from . import _inspect
from . import py3k
from ._inspect import getargspec, formatargspec
from .py3k import *
__all__ = []
__all__.extend(_inspect.__all__)
__all__.extend(py3k.__all__)

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"""Subset of inspect module from upstream python
We use this instead of upstream because upstream inspect is slow to import, and
significantly contributes to numpy import times. Importing this copy has almost
no overhead.
"""
from __future__ import division, absolute_import, print_function
import types
__all__ = ['getargspec', 'formatargspec']
# ----------------------------------------------------------- type-checking
def ismethod(object):
"""Return true if the object is an instance method.
Instance method objects provide these attributes:
__doc__ documentation string
__name__ name with which this method was defined
im_class class object in which this method belongs
im_func function object containing implementation of method
im_self instance to which this method is bound, or None
"""
return isinstance(object, types.MethodType)
def isfunction(object):
"""Return true if the object is a user-defined function.
Function objects provide these attributes:
__doc__ documentation string
__name__ name with which this function was defined
func_code code object containing compiled function bytecode
func_defaults tuple of any default values for arguments
func_doc (same as __doc__)
func_globals global namespace in which this function was defined
func_name (same as __name__)
"""
return isinstance(object, types.FunctionType)
def iscode(object):
"""Return true if the object is a code object.
Code objects provide these attributes:
co_argcount number of arguments (not including * or ** args)
co_code string of raw compiled bytecode
co_consts tuple of constants used in the bytecode
co_filename name of file in which this code object was created
co_firstlineno number of first line in Python source code
co_flags bitmap: 1=optimized | 2=newlocals | 4=*arg | 8=**arg
co_lnotab encoded mapping of line numbers to bytecode indices
co_name name with which this code object was defined
co_names tuple of names of local variables
co_nlocals number of local variables
co_stacksize virtual machine stack space required
co_varnames tuple of names of arguments and local variables
"""
return isinstance(object, types.CodeType)
# ------------------------------------------------ argument list extraction
# These constants are from Python's compile.h.
CO_OPTIMIZED, CO_NEWLOCALS, CO_VARARGS, CO_VARKEYWORDS = 1, 2, 4, 8
def getargs(co):
"""Get information about the arguments accepted by a code object.
Three things are returned: (args, varargs, varkw), where 'args' is
a list of argument names (possibly containing nested lists), and
'varargs' and 'varkw' are the names of the * and ** arguments or None.
"""
if not iscode(co):
raise TypeError('arg is not a code object')
nargs = co.co_argcount
names = co.co_varnames
args = list(names[:nargs])
# The following acrobatics are for anonymous (tuple) arguments.
# Which we do not need to support, so remove to avoid importing
# the dis module.
for i in range(nargs):
if args[i][:1] in ['', '.']:
raise TypeError("tuple function arguments are not supported")
varargs = None
if co.co_flags & CO_VARARGS:
varargs = co.co_varnames[nargs]
nargs = nargs + 1
varkw = None
if co.co_flags & CO_VARKEYWORDS:
varkw = co.co_varnames[nargs]
return args, varargs, varkw
def getargspec(func):
"""Get the names and default values of a function's arguments.
A tuple of four things is returned: (args, varargs, varkw, defaults).
'args' is a list of the argument names (it may contain nested lists).
'varargs' and 'varkw' are the names of the * and ** arguments or None.
'defaults' is an n-tuple of the default values of the last n arguments.
"""
if ismethod(func):
func = func.__func__
if not isfunction(func):
raise TypeError('arg is not a Python function')
args, varargs, varkw = getargs(func.__code__)
return args, varargs, varkw, func.__defaults__
def getargvalues(frame):
"""Get information about arguments passed into a particular frame.
A tuple of four things is returned: (args, varargs, varkw, locals).
'args' is a list of the argument names (it may contain nested lists).
'varargs' and 'varkw' are the names of the * and ** arguments or None.
'locals' is the locals dictionary of the given frame.
"""
args, varargs, varkw = getargs(frame.f_code)
return args, varargs, varkw, frame.f_locals
def joinseq(seq):
if len(seq) == 1:
return '(' + seq[0] + ',)'
else:
return '(' + ', '.join(seq) + ')'
def strseq(object, convert, join=joinseq):
"""Recursively walk a sequence, stringifying each element.
"""
if type(object) in [list, tuple]:
return join([strseq(_o, convert, join) for _o in object])
else:
return convert(object)
def formatargspec(args, varargs=None, varkw=None, defaults=None,
formatarg=str,
formatvarargs=lambda name: '*' + name,
formatvarkw=lambda name: '**' + name,
formatvalue=lambda value: '=' + repr(value),
join=joinseq):
"""Format an argument spec from the 4 values returned by getargspec.
The first four arguments are (args, varargs, varkw, defaults). The
other four arguments are the corresponding optional formatting functions
that are called to turn names and values into strings. The ninth
argument is an optional function to format the sequence of arguments.
"""
specs = []
if defaults:
firstdefault = len(args) - len(defaults)
for i in range(len(args)):
spec = strseq(args[i], formatarg, join)
if defaults and i >= firstdefault:
spec = spec + formatvalue(defaults[i - firstdefault])
specs.append(spec)
if varargs is not None:
specs.append(formatvarargs(varargs))
if varkw is not None:
specs.append(formatvarkw(varkw))
return '(' + ', '.join(specs) + ')'
def formatargvalues(args, varargs, varkw, locals,
formatarg=str,
formatvarargs=lambda name: '*' + name,
formatvarkw=lambda name: '**' + name,
formatvalue=lambda value: '=' + repr(value),
join=joinseq):
"""Format an argument spec from the 4 values returned by getargvalues.
The first four arguments are (args, varargs, varkw, locals). The
next four arguments are the corresponding optional formatting functions
that are called to turn names and values into strings. The ninth
argument is an optional function to format the sequence of arguments.
"""
def convert(name, locals=locals,
formatarg=formatarg, formatvalue=formatvalue):
return formatarg(name) + formatvalue(locals[name])
specs = [strseq(arg, convert, join) for arg in args]
if varargs:
specs.append(formatvarargs(varargs) + formatvalue(locals[varargs]))
if varkw:
specs.append(formatvarkw(varkw) + formatvalue(locals[varkw]))
return '(' + ', '.join(specs) + ')'

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"""
Python 3.X compatibility tools.
While this file was originally intented for Python 2 -> 3 transition,
it is now used to create a compatibility layer between different
minor versions of Python 3.
While the active version of numpy may not support a given version of python, we
allow downstream libraries to continue to use these shims for forward
compatibility with numpy while they transition their code to newer versions of
Python.
"""
__all__ = ['bytes', 'asbytes', 'isfileobj', 'getexception', 'strchar',
'unicode', 'asunicode', 'asbytes_nested', 'asunicode_nested',
'asstr', 'open_latin1', 'long', 'basestring', 'sixu',
'integer_types', 'is_pathlib_path', 'npy_load_module', 'Path',
'pickle', 'contextlib_nullcontext', 'os_fspath', 'os_PathLike']
import sys
import os
try:
from pathlib import Path, PurePath
except ImportError:
Path = PurePath = None
if sys.version_info[0] >= 3:
import io
try:
import pickle5 as pickle
except ImportError:
import pickle
long = int
integer_types = (int,)
basestring = str
unicode = str
bytes = bytes
def asunicode(s):
if isinstance(s, bytes):
return s.decode('latin1')
return str(s)
def asbytes(s):
if isinstance(s, bytes):
return s
return str(s).encode('latin1')
def asstr(s):
if isinstance(s, bytes):
return s.decode('latin1')
return str(s)
def isfileobj(f):
return isinstance(f, (io.FileIO, io.BufferedReader, io.BufferedWriter))
def open_latin1(filename, mode='r'):
return open(filename, mode=mode, encoding='iso-8859-1')
def sixu(s):
return s
strchar = 'U'
else:
import cpickle as pickle
bytes = str
long = long
basestring = basestring
unicode = unicode
integer_types = (int, long)
asbytes = str
asstr = str
strchar = 'S'
def isfileobj(f):
return isinstance(f, file)
def asunicode(s):
if isinstance(s, unicode):
return s
return str(s).decode('ascii')
def open_latin1(filename, mode='r'):
return open(filename, mode=mode)
def sixu(s):
return unicode(s, 'unicode_escape')
def getexception():
return sys.exc_info()[1]
def asbytes_nested(x):
if hasattr(x, '__iter__') and not isinstance(x, (bytes, unicode)):
return [asbytes_nested(y) for y in x]
else:
return asbytes(x)
def asunicode_nested(x):
if hasattr(x, '__iter__') and not isinstance(x, (bytes, unicode)):
return [asunicode_nested(y) for y in x]
else:
return asunicode(x)
def is_pathlib_path(obj):
"""
Check whether obj is a pathlib.Path object.
Prefer using `isinstance(obj, os_PathLike)` instead of this function.
"""
return Path is not None and isinstance(obj, Path)
# from Python 3.7
class contextlib_nullcontext(object):
"""Context manager that does no additional processing.
Used as a stand-in for a normal context manager, when a particular
block of code is only sometimes used with a normal context manager:
cm = optional_cm if condition else nullcontext()
with cm:
# Perform operation, using optional_cm if condition is True
"""
def __init__(self, enter_result=None):
self.enter_result = enter_result
def __enter__(self):
return self.enter_result
def __exit__(self, *excinfo):
pass
if sys.version_info[0] >= 3 and sys.version_info[1] >= 4:
def npy_load_module(name, fn, info=None):
"""
Load a module.
.. versionadded:: 1.11.2
Parameters
----------
name : str
Full module name.
fn : str
Path to module file.
info : tuple, optional
Only here for backward compatibility with Python 2.*.
Returns
-------
mod : module
"""
import importlib.machinery
return importlib.machinery.SourceFileLoader(name, fn).load_module()
else:
def npy_load_module(name, fn, info=None):
"""
Load a module.
.. versionadded:: 1.11.2
Parameters
----------
name : str
Full module name.
fn : str
Path to module file.
info : tuple, optional
Information as returned by `imp.find_module`
(suffix, mode, type).
Returns
-------
mod : module
"""
import imp
if info is None:
path = os.path.dirname(fn)
fo, fn, info = imp.find_module(name, [path])
else:
fo = open(fn, info[1])
try:
mod = imp.load_module(name, fo, fn, info)
finally:
fo.close()
return mod
# backport abc.ABC
import abc
if sys.version_info[:2] >= (3, 4):
abc_ABC = abc.ABC
else:
abc_ABC = abc.ABCMeta('ABC', (object,), {'__slots__': ()})
# Backport os.fs_path, os.PathLike, and PurePath.__fspath__
if sys.version_info[:2] >= (3, 6):
os_fspath = os.fspath
os_PathLike = os.PathLike
else:
def _PurePath__fspath__(self):
return str(self)
class os_PathLike(abc_ABC):
"""Abstract base class for implementing the file system path protocol."""
@abc.abstractmethod
def __fspath__(self):
"""Return the file system path representation of the object."""
raise NotImplementedError
@classmethod
def __subclasshook__(cls, subclass):
if PurePath is not None and issubclass(subclass, PurePath):
return True
return hasattr(subclass, '__fspath__')
def os_fspath(path):
"""Return the path representation of a path-like object.
If str or bytes is passed in, it is returned unchanged. Otherwise the
os.PathLike interface is used to get the path representation. If the
path representation is not str or bytes, TypeError is raised. If the
provided path is not str, bytes, or os.PathLike, TypeError is raised.
"""
if isinstance(path, (str, bytes)):
return path
# Work from the object's type to match method resolution of other magic
# methods.
path_type = type(path)
try:
path_repr = path_type.__fspath__(path)
except AttributeError:
if hasattr(path_type, '__fspath__'):
raise
elif PurePath is not None and issubclass(path_type, PurePath):
return _PurePath__fspath__(path)
else:
raise TypeError("expected str, bytes or os.PathLike object, "
"not " + path_type.__name__)
if isinstance(path_repr, (str, bytes)):
return path_repr
else:
raise TypeError("expected {}.__fspath__() to return str or bytes, "
"not {}".format(path_type.__name__,
type(path_repr).__name__))

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@@ -0,0 +1,12 @@
from __future__ import division, print_function
def configuration(parent_package='',top_path=None):
from numpy.distutils.misc_util import Configuration
config = Configuration('compat', parent_package, top_path)
config.add_data_dir('tests')
return config
if __name__ == '__main__':
from numpy.distutils.core import setup
setup(configuration=configuration)

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@@ -0,0 +1,21 @@
from __future__ import division, absolute_import, print_function
from os.path import join
from numpy.compat import isfileobj
from numpy.testing import assert_
from numpy.testing import tempdir
def test_isfileobj():
with tempdir(prefix="numpy_test_compat_") as folder:
filename = join(folder, 'a.bin')
with open(filename, 'wb') as f:
assert_(isfileobj(f))
with open(filename, 'ab') as f:
assert_(isfileobj(f))
with open(filename, 'rb') as f:
assert_(isfileobj(f))

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@@ -0,0 +1,87 @@
"""
Pytest configuration and fixtures for the Numpy test suite.
"""
from __future__ import division, absolute_import, print_function
import os
import pytest
import numpy
from numpy.core._multiarray_tests import get_fpu_mode
_old_fpu_mode = None
_collect_results = {}
def pytest_configure(config):
config.addinivalue_line("markers",
"valgrind_error: Tests that are known to error under valgrind.")
config.addinivalue_line("markers",
"leaks_references: Tests that are known to leak references.")
config.addinivalue_line("markers",
"slow: Tests that are very slow.")
def pytest_addoption(parser):
parser.addoption("--available-memory", action="store", default=None,
help=("Set amount of memory available for running the "
"test suite. This can result to tests requiring "
"especially large amounts of memory to be skipped. "
"Equivalent to setting environment variable "
"NPY_AVAILABLE_MEM. Default: determined"
"automatically."))
def pytest_sessionstart(session):
available_mem = session.config.getoption('available_memory')
if available_mem is not None:
os.environ['NPY_AVAILABLE_MEM'] = available_mem
#FIXME when yield tests are gone.
@pytest.hookimpl()
def pytest_itemcollected(item):
"""
Check FPU precision mode was not changed during test collection.
The clumsy way we do it here is mainly necessary because numpy
still uses yield tests, which can execute code at test collection
time.
"""
global _old_fpu_mode
mode = get_fpu_mode()
if _old_fpu_mode is None:
_old_fpu_mode = mode
elif mode != _old_fpu_mode:
_collect_results[item] = (_old_fpu_mode, mode)
_old_fpu_mode = mode
@pytest.fixture(scope="function", autouse=True)
def check_fpu_mode(request):
"""
Check FPU precision mode was not changed during the test.
"""
old_mode = get_fpu_mode()
yield
new_mode = get_fpu_mode()
if old_mode != new_mode:
raise AssertionError("FPU precision mode changed from {0:#x} to {1:#x}"
" during the test".format(old_mode, new_mode))
collect_result = _collect_results.get(request.node)
if collect_result is not None:
old_mode, new_mode = collect_result
raise AssertionError("FPU precision mode changed from {0:#x} to {1:#x}"
" when collecting the test".format(old_mode,
new_mode))
@pytest.fixture(autouse=True)
def add_np(doctest_namespace):
doctest_namespace['np'] = numpy

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@@ -0,0 +1,154 @@
"""
Contains the core of NumPy: ndarray, ufuncs, dtypes, etc.
Please note that this module is private. All functions and objects
are available in the main ``numpy`` namespace - use that instead.
"""
from __future__ import division, absolute_import, print_function
from numpy.version import version as __version__
import os
# disables OpenBLAS affinity setting of the main thread that limits
# python threads or processes to one core
env_added = []
for envkey in ['OPENBLAS_MAIN_FREE', 'GOTOBLAS_MAIN_FREE']:
if envkey not in os.environ:
os.environ[envkey] = '1'
env_added.append(envkey)
try:
from . import multiarray
except ImportError as exc:
import sys
msg = """
IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE!
Importing the numpy c-extensions failed.
- Try uninstalling and reinstalling numpy.
- If you have already done that, then:
1. Check that you expected to use Python%d.%d from "%s",
and that you have no directories in your PATH or PYTHONPATH that can
interfere with the Python and numpy version "%s" you're trying to use.
2. If (1) looks fine, you can open a new issue at
https://github.com/numpy/numpy/issues. Please include details on:
- how you installed Python
- how you installed numpy
- your operating system
- whether or not you have multiple versions of Python installed
- if you built from source, your compiler versions and ideally a build log
- If you're working with a numpy git repository, try `git clean -xdf`
(removes all files not under version control) and rebuild numpy.
Note: this error has many possible causes, so please don't comment on
an existing issue about this - open a new one instead.
Original error was: %s
""" % (sys.version_info[0], sys.version_info[1], sys.executable,
__version__, exc)
raise ImportError(msg)
finally:
for envkey in env_added:
del os.environ[envkey]
del envkey
del env_added
del os
from . import umath
# Check that multiarray,umath are pure python modules wrapping
# _multiarray_umath and not either of the old c-extension modules
if not (hasattr(multiarray, '_multiarray_umath') and
hasattr(umath, '_multiarray_umath')):
import sys
path = sys.modules['numpy'].__path__
msg = ("Something is wrong with the numpy installation. "
"While importing we detected an older version of "
"numpy in {}. One method of fixing this is to repeatedly uninstall "
"numpy until none is found, then reinstall this version.")
raise ImportError(msg.format(path))
from . import numerictypes as nt
multiarray.set_typeDict(nt.sctypeDict)
from . import numeric
from .numeric import *
from . import fromnumeric
from .fromnumeric import *
from . import defchararray as char
from . import records as rec
from .records import *
from .memmap import *
from .defchararray import chararray
from . import function_base
from .function_base import *
from . import machar
from .machar import *
from . import getlimits
from .getlimits import *
from . import shape_base
from .shape_base import *
from . import einsumfunc
from .einsumfunc import *
del nt
from .fromnumeric import amax as max, amin as min, round_ as round
from .numeric import absolute as abs
# do this after everything else, to minimize the chance of this misleadingly
# appearing in an import-time traceback
from . import _add_newdocs
# add these for module-freeze analysis (like PyInstaller)
from . import _dtype_ctypes
from . import _internal
from . import _dtype
from . import _methods
__all__ = ['char', 'rec', 'memmap']
__all__ += numeric.__all__
__all__ += fromnumeric.__all__
__all__ += rec.__all__
__all__ += ['chararray']
__all__ += function_base.__all__
__all__ += machar.__all__
__all__ += getlimits.__all__
__all__ += shape_base.__all__
__all__ += einsumfunc.__all__
# Make it possible so that ufuncs can be pickled
# Here are the loading and unloading functions
# The name numpy.core._ufunc_reconstruct must be
# available for unpickling to work.
def _ufunc_reconstruct(module, name):
# The `fromlist` kwarg is required to ensure that `mod` points to the
# inner-most module rather than the parent package when module name is
# nested. This makes it possible to pickle non-toplevel ufuncs such as
# scipy.special.expit for instance.
mod = __import__(module, fromlist=[name])
return getattr(mod, name)
def _ufunc_reduce(func):
from pickle import whichmodule
name = func.__name__
return _ufunc_reconstruct, (whichmodule(func, name), name)
import sys
if sys.version_info[0] >= 3:
import copyreg
else:
import copy_reg as copyreg
copyreg.pickle(ufunc, _ufunc_reduce, _ufunc_reconstruct)
# Unclutter namespace (must keep _ufunc_reconstruct for unpickling)
del copyreg
del sys
del _ufunc_reduce
from numpy._pytesttester import PytestTester
test = PytestTester(__name__)
del PytestTester

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@@ -0,0 +1,324 @@
"""
Functions in the ``as*array`` family that promote array-likes into arrays.
`require` fits this category despite its name not matching this pattern.
"""
from __future__ import division, absolute_import, print_function
from .overrides import set_module
from .multiarray import array
__all__ = [
"asarray", "asanyarray", "ascontiguousarray", "asfortranarray", "require",
]
@set_module('numpy')
def asarray(a, dtype=None, order=None):
"""Convert the input to an array.
Parameters
----------
a : array_like
Input data, in any form that can be converted to an array. This
includes lists, lists of tuples, tuples, tuples of tuples, tuples
of lists and ndarrays.
dtype : data-type, optional
By default, the data-type is inferred from the input data.
order : {'C', 'F'}, optional
Whether to use row-major (C-style) or
column-major (Fortran-style) memory representation.
Defaults to 'C'.
Returns
-------
out : ndarray
Array interpretation of `a`. No copy is performed if the input
is already an ndarray with matching dtype and order. If `a` is a
subclass of ndarray, a base class ndarray is returned.
See Also
--------
asanyarray : Similar function which passes through subclasses.
ascontiguousarray : Convert input to a contiguous array.
asfarray : Convert input to a floating point ndarray.
asfortranarray : Convert input to an ndarray with column-major
memory order.
asarray_chkfinite : Similar function which checks input for NaNs and Infs.
fromiter : Create an array from an iterator.
fromfunction : Construct an array by executing a function on grid
positions.
Examples
--------
Convert a list into an array:
>>> a = [1, 2]
>>> np.asarray(a)
array([1, 2])
Existing arrays are not copied:
>>> a = np.array([1, 2])
>>> np.asarray(a) is a
True
If `dtype` is set, array is copied only if dtype does not match:
>>> a = np.array([1, 2], dtype=np.float32)
>>> np.asarray(a, dtype=np.float32) is a
True
>>> np.asarray(a, dtype=np.float64) is a
False
Contrary to `asanyarray`, ndarray subclasses are not passed through:
>>> issubclass(np.recarray, np.ndarray)
True
>>> a = np.array([(1.0, 2), (3.0, 4)], dtype='f4,i4').view(np.recarray)
>>> np.asarray(a) is a
False
>>> np.asanyarray(a) is a
True
"""
return array(a, dtype, copy=False, order=order)
@set_module('numpy')
def asanyarray(a, dtype=None, order=None):
"""Convert the input to an ndarray, but pass ndarray subclasses through.
Parameters
----------
a : array_like
Input data, in any form that can be converted to an array. This
includes scalars, lists, lists of tuples, tuples, tuples of tuples,
tuples of lists, and ndarrays.
dtype : data-type, optional
By default, the data-type is inferred from the input data.
order : {'C', 'F'}, optional
Whether to use row-major (C-style) or column-major
(Fortran-style) memory representation. Defaults to 'C'.
Returns
-------
out : ndarray or an ndarray subclass
Array interpretation of `a`. If `a` is an ndarray or a subclass
of ndarray, it is returned as-is and no copy is performed.
See Also
--------
asarray : Similar function which always returns ndarrays.
ascontiguousarray : Convert input to a contiguous array.
asfarray : Convert input to a floating point ndarray.
asfortranarray : Convert input to an ndarray with column-major
memory order.
asarray_chkfinite : Similar function which checks input for NaNs and
Infs.
fromiter : Create an array from an iterator.
fromfunction : Construct an array by executing a function on grid
positions.
Examples
--------
Convert a list into an array:
>>> a = [1, 2]
>>> np.asanyarray(a)
array([1, 2])
Instances of `ndarray` subclasses are passed through as-is:
>>> a = np.array([(1.0, 2), (3.0, 4)], dtype='f4,i4').view(np.recarray)
>>> np.asanyarray(a) is a
True
"""
return array(a, dtype, copy=False, order=order, subok=True)
@set_module('numpy')
def ascontiguousarray(a, dtype=None):
"""
Return a contiguous array (ndim >= 1) in memory (C order).
Parameters
----------
a : array_like
Input array.
dtype : str or dtype object, optional
Data-type of returned array.
Returns
-------
out : ndarray
Contiguous array of same shape and content as `a`, with type `dtype`
if specified.
See Also
--------
asfortranarray : Convert input to an ndarray with column-major
memory order.
require : Return an ndarray that satisfies requirements.
ndarray.flags : Information about the memory layout of the array.
Examples
--------
>>> x = np.arange(6).reshape(2,3)
>>> np.ascontiguousarray(x, dtype=np.float32)
array([[0., 1., 2.],
[3., 4., 5.]], dtype=float32)
>>> x.flags['C_CONTIGUOUS']
True
Note: This function returns an array with at least one-dimension (1-d)
so it will not preserve 0-d arrays.
"""
return array(a, dtype, copy=False, order='C', ndmin=1)
@set_module('numpy')
def asfortranarray(a, dtype=None):
"""
Return an array (ndim >= 1) laid out in Fortran order in memory.
Parameters
----------
a : array_like
Input array.
dtype : str or dtype object, optional
By default, the data-type is inferred from the input data.
Returns
-------
out : ndarray
The input `a` in Fortran, or column-major, order.
See Also
--------
ascontiguousarray : Convert input to a contiguous (C order) array.
asanyarray : Convert input to an ndarray with either row or
column-major memory order.
require : Return an ndarray that satisfies requirements.
ndarray.flags : Information about the memory layout of the array.
Examples
--------
>>> x = np.arange(6).reshape(2,3)
>>> y = np.asfortranarray(x)
>>> x.flags['F_CONTIGUOUS']
False
>>> y.flags['F_CONTIGUOUS']
True
Note: This function returns an array with at least one-dimension (1-d)
so it will not preserve 0-d arrays.
"""
return array(a, dtype, copy=False, order='F', ndmin=1)
@set_module('numpy')
def require(a, dtype=None, requirements=None):
"""
Return an ndarray of the provided type that satisfies requirements.
This function is useful to be sure that an array with the correct flags
is returned for passing to compiled code (perhaps through ctypes).
Parameters
----------
a : array_like
The object to be converted to a type-and-requirement-satisfying array.
dtype : data-type
The required data-type. If None preserve the current dtype. If your
application requires the data to be in native byteorder, include
a byteorder specification as a part of the dtype specification.
requirements : str or list of str
The requirements list can be any of the following
* 'F_CONTIGUOUS' ('F') - ensure a Fortran-contiguous array
* 'C_CONTIGUOUS' ('C') - ensure a C-contiguous array
* 'ALIGNED' ('A') - ensure a data-type aligned array
* 'WRITEABLE' ('W') - ensure a writable array
* 'OWNDATA' ('O') - ensure an array that owns its own data
* 'ENSUREARRAY', ('E') - ensure a base array, instead of a subclass
Returns
-------
out : ndarray
Array with specified requirements and type if given.
See Also
--------
asarray : Convert input to an ndarray.
asanyarray : Convert to an ndarray, but pass through ndarray subclasses.
ascontiguousarray : Convert input to a contiguous array.
asfortranarray : Convert input to an ndarray with column-major
memory order.
ndarray.flags : Information about the memory layout of the array.
Notes
-----
The returned array will be guaranteed to have the listed requirements
by making a copy if needed.
Examples
--------
>>> x = np.arange(6).reshape(2,3)
>>> x.flags
C_CONTIGUOUS : True
F_CONTIGUOUS : False
OWNDATA : False
WRITEABLE : True
ALIGNED : True
WRITEBACKIFCOPY : False
UPDATEIFCOPY : False
>>> y = np.require(x, dtype=np.float32, requirements=['A', 'O', 'W', 'F'])
>>> y.flags
C_CONTIGUOUS : False
F_CONTIGUOUS : True
OWNDATA : True
WRITEABLE : True
ALIGNED : True
WRITEBACKIFCOPY : False
UPDATEIFCOPY : False
"""
possible_flags = {'C': 'C', 'C_CONTIGUOUS': 'C', 'CONTIGUOUS': 'C',
'F': 'F', 'F_CONTIGUOUS': 'F', 'FORTRAN': 'F',
'A': 'A', 'ALIGNED': 'A',
'W': 'W', 'WRITEABLE': 'W',
'O': 'O', 'OWNDATA': 'O',
'E': 'E', 'ENSUREARRAY': 'E'}
if not requirements:
return asanyarray(a, dtype=dtype)
else:
requirements = {possible_flags[x.upper()] for x in requirements}
if 'E' in requirements:
requirements.remove('E')
subok = False
else:
subok = True
order = 'A'
if requirements >= {'C', 'F'}:
raise ValueError('Cannot specify both "C" and "F" order')
elif 'F' in requirements:
order = 'F'
requirements.remove('F')
elif 'C' in requirements:
order = 'C'
requirements.remove('C')
arr = array(a, dtype=dtype, order=order, copy=False, subok=subok)
for prop in requirements:
if not arr.flags[prop]:
arr = arr.copy(order)
break
return arr

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@@ -0,0 +1,354 @@
"""
A place for code to be called from the implementation of np.dtype
String handling is much easier to do correctly in python.
"""
from __future__ import division, absolute_import, print_function
import sys
import numpy as np
_kind_to_stem = {
'u': 'uint',
'i': 'int',
'c': 'complex',
'f': 'float',
'b': 'bool',
'V': 'void',
'O': 'object',
'M': 'datetime',
'm': 'timedelta'
}
if sys.version_info[0] >= 3:
_kind_to_stem.update({
'S': 'bytes',
'U': 'str'
})
else:
_kind_to_stem.update({
'S': 'string',
'U': 'unicode'
})
def _kind_name(dtype):
try:
return _kind_to_stem[dtype.kind]
except KeyError:
raise RuntimeError(
"internal dtype error, unknown kind {!r}"
.format(dtype.kind)
)
def __str__(dtype):
if dtype.fields is not None:
return _struct_str(dtype, include_align=True)
elif dtype.subdtype:
return _subarray_str(dtype)
elif issubclass(dtype.type, np.flexible) or not dtype.isnative:
return dtype.str
else:
return dtype.name
def __repr__(dtype):
arg_str = _construction_repr(dtype, include_align=False)
if dtype.isalignedstruct:
arg_str = arg_str + ", align=True"
return "dtype({})".format(arg_str)
def _unpack_field(dtype, offset, title=None):
"""
Helper function to normalize the items in dtype.fields.
Call as:
dtype, offset, title = _unpack_field(*dtype.fields[name])
"""
return dtype, offset, title
def _isunsized(dtype):
# PyDataType_ISUNSIZED
return dtype.itemsize == 0
def _construction_repr(dtype, include_align=False, short=False):
"""
Creates a string repr of the dtype, excluding the 'dtype()' part
surrounding the object. This object may be a string, a list, or
a dict depending on the nature of the dtype. This
is the object passed as the first parameter to the dtype
constructor, and if no additional constructor parameters are
given, will reproduce the exact memory layout.
Parameters
----------
short : bool
If true, this creates a shorter repr using 'kind' and 'itemsize', instead
of the longer type name.
include_align : bool
If true, this includes the 'align=True' parameter
inside the struct dtype construction dict when needed. Use this flag
if you want a proper repr string without the 'dtype()' part around it.
If false, this does not preserve the
'align=True' parameter or sticky NPY_ALIGNED_STRUCT flag for
struct arrays like the regular repr does, because the 'align'
flag is not part of first dtype constructor parameter. This
mode is intended for a full 'repr', where the 'align=True' is
provided as the second parameter.
"""
if dtype.fields is not None:
return _struct_str(dtype, include_align=include_align)
elif dtype.subdtype:
return _subarray_str(dtype)
else:
return _scalar_str(dtype, short=short)
def _scalar_str(dtype, short):
byteorder = _byte_order_str(dtype)
if dtype.type == np.bool_:
if short:
return "'?'"
else:
return "'bool'"
elif dtype.type == np.object_:
# The object reference may be different sizes on different
# platforms, so it should never include the itemsize here.
return "'O'"
elif dtype.type == np.string_:
if _isunsized(dtype):
return "'S'"
else:
return "'S%d'" % dtype.itemsize
elif dtype.type == np.unicode_:
if _isunsized(dtype):
return "'%sU'" % byteorder
else:
return "'%sU%d'" % (byteorder, dtype.itemsize / 4)
# unlike the other types, subclasses of void are preserved - but
# historically the repr does not actually reveal the subclass
elif issubclass(dtype.type, np.void):
if _isunsized(dtype):
return "'V'"
else:
return "'V%d'" % dtype.itemsize
elif dtype.type == np.datetime64:
return "'%sM8%s'" % (byteorder, _datetime_metadata_str(dtype))
elif dtype.type == np.timedelta64:
return "'%sm8%s'" % (byteorder, _datetime_metadata_str(dtype))
elif np.issubdtype(dtype, np.number):
# Short repr with endianness, like '<f8'
if short or dtype.byteorder not in ('=', '|'):
return "'%s%c%d'" % (byteorder, dtype.kind, dtype.itemsize)
# Longer repr, like 'float64'
else:
return "'%s%d'" % (_kind_name(dtype), 8*dtype.itemsize)
elif dtype.isbuiltin == 2:
return dtype.type.__name__
else:
raise RuntimeError(
"Internal error: NumPy dtype unrecognized type number")
def _byte_order_str(dtype):
""" Normalize byteorder to '<' or '>' """
# hack to obtain the native and swapped byte order characters
swapped = np.dtype(int).newbyteorder('s')
native = swapped.newbyteorder('s')
byteorder = dtype.byteorder
if byteorder == '=':
return native.byteorder
if byteorder == 's':
# TODO: this path can never be reached
return swapped.byteorder
elif byteorder == '|':
return ''
else:
return byteorder
def _datetime_metadata_str(dtype):
# TODO: this duplicates the C append_metastr_to_string
unit, count = np.datetime_data(dtype)
if unit == 'generic':
return ''
elif count == 1:
return '[{}]'.format(unit)
else:
return '[{}{}]'.format(count, unit)
def _struct_dict_str(dtype, includealignedflag):
# unpack the fields dictionary into ls
names = dtype.names
fld_dtypes = []
offsets = []
titles = []
for name in names:
fld_dtype, offset, title = _unpack_field(*dtype.fields[name])
fld_dtypes.append(fld_dtype)
offsets.append(offset)
titles.append(title)
# Build up a string to make the dictionary
# First, the names
ret = "{'names':["
ret += ",".join(repr(name) for name in names)
# Second, the formats
ret += "], 'formats':["
ret += ",".join(
_construction_repr(fld_dtype, short=True) for fld_dtype in fld_dtypes)
# Third, the offsets
ret += "], 'offsets':["
ret += ",".join("%d" % offset for offset in offsets)
# Fourth, the titles
if any(title is not None for title in titles):
ret += "], 'titles':["
ret += ",".join(repr(title) for title in titles)
# Fifth, the itemsize
ret += "], 'itemsize':%d" % dtype.itemsize
if (includealignedflag and dtype.isalignedstruct):
# Finally, the aligned flag
ret += ", 'aligned':True}"
else:
ret += "}"
return ret
def _is_packed(dtype):
"""
Checks whether the structured data type in 'dtype'
has a simple layout, where all the fields are in order,
and follow each other with no alignment padding.
When this returns true, the dtype can be reconstructed
from a list of the field names and dtypes with no additional
dtype parameters.
Duplicates the C `is_dtype_struct_simple_unaligned_layout` function.
"""
total_offset = 0
for name in dtype.names:
fld_dtype, fld_offset, title = _unpack_field(*dtype.fields[name])
if fld_offset != total_offset:
return False
total_offset += fld_dtype.itemsize
if total_offset != dtype.itemsize:
return False
return True
def _struct_list_str(dtype):
items = []
for name in dtype.names:
fld_dtype, fld_offset, title = _unpack_field(*dtype.fields[name])
item = "("
if title is not None:
item += "({!r}, {!r}), ".format(title, name)
else:
item += "{!r}, ".format(name)
# Special case subarray handling here
if fld_dtype.subdtype is not None:
base, shape = fld_dtype.subdtype
item += "{}, {}".format(
_construction_repr(base, short=True),
shape
)
else:
item += _construction_repr(fld_dtype, short=True)
item += ")"
items.append(item)
return "[" + ", ".join(items) + "]"
def _struct_str(dtype, include_align):
# The list str representation can't include the 'align=' flag,
# so if it is requested and the struct has the aligned flag set,
# we must use the dict str instead.
if not (include_align and dtype.isalignedstruct) and _is_packed(dtype):
sub = _struct_list_str(dtype)
else:
sub = _struct_dict_str(dtype, include_align)
# If the data type isn't the default, void, show it
if dtype.type != np.void:
return "({t.__module__}.{t.__name__}, {f})".format(t=dtype.type, f=sub)
else:
return sub
def _subarray_str(dtype):
base, shape = dtype.subdtype
return "({}, {})".format(
_construction_repr(base, short=True),
shape
)
def _name_includes_bit_suffix(dtype):
if dtype.type == np.object_:
# pointer size varies by system, best to omit it
return False
elif dtype.type == np.bool_:
# implied
return False
elif np.issubdtype(dtype, np.flexible) and _isunsized(dtype):
# unspecified
return False
else:
return True
def _name_get(dtype):
# provides dtype.name.__get__, documented as returning a "bit name"
if dtype.isbuiltin == 2:
# user dtypes don't promise to do anything special
return dtype.type.__name__
if issubclass(dtype.type, np.void):
# historically, void subclasses preserve their name, eg `record64`
name = dtype.type.__name__
else:
name = _kind_name(dtype)
# append bit counts
if _name_includes_bit_suffix(dtype):
name += "{}".format(dtype.itemsize * 8)
# append metadata to datetimes
if dtype.type in (np.datetime64, np.timedelta64):
name += _datetime_metadata_str(dtype)
return name

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"""
Conversion from ctypes to dtype.
In an ideal world, we could achieve this through the PEP3118 buffer protocol,
something like::
def dtype_from_ctypes_type(t):
# needed to ensure that the shape of `t` is within memoryview.format
class DummyStruct(ctypes.Structure):
_fields_ = [('a', t)]
# empty to avoid memory allocation
ctype_0 = (DummyStruct * 0)()
mv = memoryview(ctype_0)
# convert the struct, and slice back out the field
return _dtype_from_pep3118(mv.format)['a']
Unfortunately, this fails because:
* ctypes cannot handle length-0 arrays with PEP3118 (bpo-32782)
* PEP3118 cannot represent unions, but both numpy and ctypes can
* ctypes cannot handle big-endian structs with PEP3118 (bpo-32780)
"""
import _ctypes
import ctypes
import numpy as np
def _from_ctypes_array(t):
return np.dtype((dtype_from_ctypes_type(t._type_), (t._length_,)))
def _from_ctypes_structure(t):
for item in t._fields_:
if len(item) > 2:
raise TypeError(
"ctypes bitfields have no dtype equivalent")
if hasattr(t, "_pack_"):
formats = []
offsets = []
names = []
current_offset = 0
for fname, ftyp in t._fields_:
names.append(fname)
formats.append(dtype_from_ctypes_type(ftyp))
# Each type has a default offset, this is platform dependent for some types.
effective_pack = min(t._pack_, ctypes.alignment(ftyp))
current_offset = ((current_offset + effective_pack - 1) // effective_pack) * effective_pack
offsets.append(current_offset)
current_offset += ctypes.sizeof(ftyp)
return np.dtype(dict(
formats=formats,
offsets=offsets,
names=names,
itemsize=ctypes.sizeof(t)))
else:
fields = []
for fname, ftyp in t._fields_:
fields.append((fname, dtype_from_ctypes_type(ftyp)))
# by default, ctypes structs are aligned
return np.dtype(fields, align=True)
def _from_ctypes_scalar(t):
"""
Return the dtype type with endianness included if it's the case
"""
if getattr(t, '__ctype_be__', None) is t:
return np.dtype('>' + t._type_)
elif getattr(t, '__ctype_le__', None) is t:
return np.dtype('<' + t._type_)
else:
return np.dtype(t._type_)
def _from_ctypes_union(t):
formats = []
offsets = []
names = []
for fname, ftyp in t._fields_:
names.append(fname)
formats.append(dtype_from_ctypes_type(ftyp))
offsets.append(0) # Union fields are offset to 0
return np.dtype(dict(
formats=formats,
offsets=offsets,
names=names,
itemsize=ctypes.sizeof(t)))
def dtype_from_ctypes_type(t):
"""
Construct a dtype object from a ctypes type
"""
if issubclass(t, _ctypes.Array):
return _from_ctypes_array(t)
elif issubclass(t, _ctypes._Pointer):
raise TypeError("ctypes pointers have no dtype equivalent")
elif issubclass(t, _ctypes.Structure):
return _from_ctypes_structure(t)
elif issubclass(t, _ctypes.Union):
return _from_ctypes_union(t)
elif isinstance(getattr(t, '_type_', None), str):
return _from_ctypes_scalar(t)
else:
raise NotImplementedError(
"Unknown ctypes type {}".format(t.__name__))

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@@ -0,0 +1,200 @@
"""
Various richly-typed exceptions, that also help us deal with string formatting
in python where it's easier.
By putting the formatting in `__str__`, we also avoid paying the cost for
users who silence the exceptions.
"""
from numpy.core.overrides import set_module
def _unpack_tuple(tup):
if len(tup) == 1:
return tup[0]
else:
return tup
def _display_as_base(cls):
"""
A decorator that makes an exception class look like its base.
We use this to hide subclasses that are implementation details - the user
should catch the base type, which is what the traceback will show them.
Classes decorated with this decorator are subject to removal without a
deprecation warning.
"""
assert issubclass(cls, Exception)
cls.__name__ = cls.__base__.__name__
cls.__qualname__ = cls.__base__.__qualname__
set_module(cls.__base__.__module__)(cls)
return cls
class UFuncTypeError(TypeError):
""" Base class for all ufunc exceptions """
def __init__(self, ufunc):
self.ufunc = ufunc
@_display_as_base
class _UFuncBinaryResolutionError(UFuncTypeError):
""" Thrown when a binary resolution fails """
def __init__(self, ufunc, dtypes):
super().__init__(ufunc)
self.dtypes = tuple(dtypes)
assert len(self.dtypes) == 2
def __str__(self):
return (
"ufunc {!r} cannot use operands with types {!r} and {!r}"
).format(
self.ufunc.__name__, *self.dtypes
)
@_display_as_base
class _UFuncNoLoopError(UFuncTypeError):
""" Thrown when a ufunc loop cannot be found """
def __init__(self, ufunc, dtypes):
super().__init__(ufunc)
self.dtypes = tuple(dtypes)
def __str__(self):
return (
"ufunc {!r} did not contain a loop with signature matching types "
"{!r} -> {!r}"
).format(
self.ufunc.__name__,
_unpack_tuple(self.dtypes[:self.ufunc.nin]),
_unpack_tuple(self.dtypes[self.ufunc.nin:])
)
@_display_as_base
class _UFuncCastingError(UFuncTypeError):
def __init__(self, ufunc, casting, from_, to):
super().__init__(ufunc)
self.casting = casting
self.from_ = from_
self.to = to
@_display_as_base
class _UFuncInputCastingError(_UFuncCastingError):
""" Thrown when a ufunc input cannot be casted """
def __init__(self, ufunc, casting, from_, to, i):
super().__init__(ufunc, casting, from_, to)
self.in_i = i
def __str__(self):
# only show the number if more than one input exists
i_str = "{} ".format(self.in_i) if self.ufunc.nin != 1 else ""
return (
"Cannot cast ufunc {!r} input {}from {!r} to {!r} with casting "
"rule {!r}"
).format(
self.ufunc.__name__, i_str, self.from_, self.to, self.casting
)
@_display_as_base
class _UFuncOutputCastingError(_UFuncCastingError):
""" Thrown when a ufunc output cannot be casted """
def __init__(self, ufunc, casting, from_, to, i):
super().__init__(ufunc, casting, from_, to)
self.out_i = i
def __str__(self):
# only show the number if more than one output exists
i_str = "{} ".format(self.out_i) if self.ufunc.nout != 1 else ""
return (
"Cannot cast ufunc {!r} output {}from {!r} to {!r} with casting "
"rule {!r}"
).format(
self.ufunc.__name__, i_str, self.from_, self.to, self.casting
)
# Exception used in shares_memory()
@set_module('numpy')
class TooHardError(RuntimeError):
pass
@set_module('numpy')
class AxisError(ValueError, IndexError):
""" Axis supplied was invalid. """
def __init__(self, axis, ndim=None, msg_prefix=None):
# single-argument form just delegates to base class
if ndim is None and msg_prefix is None:
msg = axis
# do the string formatting here, to save work in the C code
else:
msg = ("axis {} is out of bounds for array of dimension {}"
.format(axis, ndim))
if msg_prefix is not None:
msg = "{}: {}".format(msg_prefix, msg)
super(AxisError, self).__init__(msg)
@_display_as_base
class _ArrayMemoryError(MemoryError):
""" Thrown when an array cannot be allocated"""
def __init__(self, shape, dtype):
self.shape = shape
self.dtype = dtype
@property
def _total_size(self):
num_bytes = self.dtype.itemsize
for dim in self.shape:
num_bytes *= dim
return num_bytes
@staticmethod
def _size_to_string(num_bytes):
""" Convert a number of bytes into a binary size string """
import math
# https://en.wikipedia.org/wiki/Binary_prefix
LOG2_STEP = 10
STEP = 1024
units = ['bytes', 'KiB', 'MiB', 'GiB', 'TiB', 'PiB', 'EiB']
unit_i = max(num_bytes.bit_length() - 1, 1) // LOG2_STEP
unit_val = 1 << (unit_i * LOG2_STEP)
n_units = num_bytes / unit_val
del unit_val
# ensure we pick a unit that is correct after rounding
if round(n_units) == STEP:
unit_i += 1
n_units /= STEP
# deal with sizes so large that we don't have units for them
if unit_i >= len(units):
new_unit_i = len(units) - 1
n_units *= 1 << ((unit_i - new_unit_i) * LOG2_STEP)
unit_i = new_unit_i
unit_name = units[unit_i]
# format with a sensible number of digits
if unit_i == 0:
# no decimal point on bytes
return '{:.0f} {}'.format(n_units, unit_name)
elif round(n_units) < 1000:
# 3 significant figures, if none are dropped to the left of the .
return '{:#.3g} {}'.format(n_units, unit_name)
else:
# just give all the digits otherwise
return '{:#.0f} {}'.format(n_units, unit_name)
def __str__(self):
size_str = self._size_to_string(self._total_size)
return (
"Unable to allocate {} for an array with shape {} and data type {}"
.format(size_str, self.shape, self.dtype)
)

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"""
A place for internal code
Some things are more easily handled Python.
"""
from __future__ import division, absolute_import, print_function
import re
import sys
import platform
from numpy.compat import unicode
from .multiarray import dtype, array, ndarray
try:
import ctypes
except ImportError:
ctypes = None
IS_PYPY = platform.python_implementation() == 'PyPy'
if (sys.byteorder == 'little'):
_nbo = b'<'
else:
_nbo = b'>'
def _makenames_list(adict, align):
allfields = []
fnames = list(adict.keys())
for fname in fnames:
obj = adict[fname]
n = len(obj)
if not isinstance(obj, tuple) or n not in [2, 3]:
raise ValueError("entry not a 2- or 3- tuple")
if (n > 2) and (obj[2] == fname):
continue
num = int(obj[1])
if (num < 0):
raise ValueError("invalid offset.")
format = dtype(obj[0], align=align)
if (n > 2):
title = obj[2]
else:
title = None
allfields.append((fname, format, num, title))
# sort by offsets
allfields.sort(key=lambda x: x[2])
names = [x[0] for x in allfields]
formats = [x[1] for x in allfields]
offsets = [x[2] for x in allfields]
titles = [x[3] for x in allfields]
return names, formats, offsets, titles
# Called in PyArray_DescrConverter function when
# a dictionary without "names" and "formats"
# fields is used as a data-type descriptor.
def _usefields(adict, align):
try:
names = adict[-1]
except KeyError:
names = None
if names is None:
names, formats, offsets, titles = _makenames_list(adict, align)
else:
formats = []
offsets = []
titles = []
for name in names:
res = adict[name]
formats.append(res[0])
offsets.append(res[1])
if (len(res) > 2):
titles.append(res[2])
else:
titles.append(None)
return dtype({"names": names,
"formats": formats,
"offsets": offsets,
"titles": titles}, align)
# construct an array_protocol descriptor list
# from the fields attribute of a descriptor
# This calls itself recursively but should eventually hit
# a descriptor that has no fields and then return
# a simple typestring
def _array_descr(descriptor):
fields = descriptor.fields
if fields is None:
subdtype = descriptor.subdtype
if subdtype is None:
if descriptor.metadata is None:
return descriptor.str
else:
new = descriptor.metadata.copy()
if new:
return (descriptor.str, new)
else:
return descriptor.str
else:
return (_array_descr(subdtype[0]), subdtype[1])
names = descriptor.names
ordered_fields = [fields[x] + (x,) for x in names]
result = []
offset = 0
for field in ordered_fields:
if field[1] > offset:
num = field[1] - offset
result.append(('', '|V%d' % num))
offset += num
elif field[1] < offset:
raise ValueError(
"dtype.descr is not defined for types with overlapping or "
"out-of-order fields")
if len(field) > 3:
name = (field[2], field[3])
else:
name = field[2]
if field[0].subdtype:
tup = (name, _array_descr(field[0].subdtype[0]),
field[0].subdtype[1])
else:
tup = (name, _array_descr(field[0]))
offset += field[0].itemsize
result.append(tup)
if descriptor.itemsize > offset:
num = descriptor.itemsize - offset
result.append(('', '|V%d' % num))
return result
# Build a new array from the information in a pickle.
# Note that the name numpy.core._internal._reconstruct is embedded in
# pickles of ndarrays made with NumPy before release 1.0
# so don't remove the name here, or you'll
# break backward compatibility.
def _reconstruct(subtype, shape, dtype):
return ndarray.__new__(subtype, shape, dtype)
# format_re was originally from numarray by J. Todd Miller
format_re = re.compile(br'(?P<order1>[<>|=]?)'
br'(?P<repeats> *[(]?[ ,0-9]*[)]? *)'
br'(?P<order2>[<>|=]?)'
br'(?P<dtype>[A-Za-z0-9.?]*(?:\[[a-zA-Z0-9,.]+\])?)')
sep_re = re.compile(br'\s*,\s*')
space_re = re.compile(br'\s+$')
# astr is a string (perhaps comma separated)
_convorder = {b'=': _nbo}
def _commastring(astr):
startindex = 0
result = []
while startindex < len(astr):
mo = format_re.match(astr, pos=startindex)
try:
(order1, repeats, order2, dtype) = mo.groups()
except (TypeError, AttributeError):
raise ValueError('format number %d of "%s" is not recognized' %
(len(result)+1, astr))
startindex = mo.end()
# Separator or ending padding
if startindex < len(astr):
if space_re.match(astr, pos=startindex):
startindex = len(astr)
else:
mo = sep_re.match(astr, pos=startindex)
if not mo:
raise ValueError(
'format number %d of "%s" is not recognized' %
(len(result)+1, astr))
startindex = mo.end()
if order2 == b'':
order = order1
elif order1 == b'':
order = order2
else:
order1 = _convorder.get(order1, order1)
order2 = _convorder.get(order2, order2)
if (order1 != order2):
raise ValueError(
'inconsistent byte-order specification %s and %s' %
(order1, order2))
order = order1
if order in [b'|', b'=', _nbo]:
order = b''
dtype = order + dtype
if (repeats == b''):
newitem = dtype
else:
newitem = (dtype, eval(repeats))
result.append(newitem)
return result
class dummy_ctype(object):
def __init__(self, cls):
self._cls = cls
def __mul__(self, other):
return self
def __call__(self, *other):
return self._cls(other)
def __eq__(self, other):
return self._cls == other._cls
def __ne__(self, other):
return self._cls != other._cls
def _getintp_ctype():
val = _getintp_ctype.cache
if val is not None:
return val
if ctypes is None:
import numpy as np
val = dummy_ctype(np.intp)
else:
char = dtype('p').char
if (char == 'i'):
val = ctypes.c_int
elif char == 'l':
val = ctypes.c_long
elif char == 'q':
val = ctypes.c_longlong
else:
val = ctypes.c_long
_getintp_ctype.cache = val
return val
_getintp_ctype.cache = None
# Used for .ctypes attribute of ndarray
class _missing_ctypes(object):
def cast(self, num, obj):
return num.value
class c_void_p(object):
def __init__(self, ptr):
self.value = ptr
class _ctypes(object):
def __init__(self, array, ptr=None):
self._arr = array
if ctypes:
self._ctypes = ctypes
self._data = self._ctypes.c_void_p(ptr)
else:
# fake a pointer-like object that holds onto the reference
self._ctypes = _missing_ctypes()
self._data = self._ctypes.c_void_p(ptr)
self._data._objects = array
if self._arr.ndim == 0:
self._zerod = True
else:
self._zerod = False
def data_as(self, obj):
"""
Return the data pointer cast to a particular c-types object.
For example, calling ``self._as_parameter_`` is equivalent to
``self.data_as(ctypes.c_void_p)``. Perhaps you want to use the data as a
pointer to a ctypes array of floating-point data:
``self.data_as(ctypes.POINTER(ctypes.c_double))``.
The returned pointer will keep a reference to the array.
"""
# _ctypes.cast function causes a circular reference of self._data in
# self._data._objects. Attributes of self._data cannot be released
# until gc.collect is called. Make a copy of the pointer first then let
# it hold the array reference. This is a workaround to circumvent the
# CPython bug https://bugs.python.org/issue12836
ptr = self._ctypes.cast(self._data, obj)
ptr._arr = self._arr
return ptr
def shape_as(self, obj):
"""
Return the shape tuple as an array of some other c-types
type. For example: ``self.shape_as(ctypes.c_short)``.
"""
if self._zerod:
return None
return (obj*self._arr.ndim)(*self._arr.shape)
def strides_as(self, obj):
"""
Return the strides tuple as an array of some other
c-types type. For example: ``self.strides_as(ctypes.c_longlong)``.
"""
if self._zerod:
return None
return (obj*self._arr.ndim)(*self._arr.strides)
@property
def data(self):
"""
A pointer to the memory area of the array as a Python integer.
This memory area may contain data that is not aligned, or not in correct
byte-order. The memory area may not even be writeable. The array
flags and data-type of this array should be respected when passing this
attribute to arbitrary C-code to avoid trouble that can include Python
crashing. User Beware! The value of this attribute is exactly the same
as ``self._array_interface_['data'][0]``.
Note that unlike ``data_as``, a reference will not be kept to the array:
code like ``ctypes.c_void_p((a + b).ctypes.data)`` will result in a
pointer to a deallocated array, and should be spelt
``(a + b).ctypes.data_as(ctypes.c_void_p)``
"""
return self._data.value
@property
def shape(self):
"""
(c_intp*self.ndim): A ctypes array of length self.ndim where
the basetype is the C-integer corresponding to ``dtype('p')`` on this
platform. This base-type could be `ctypes.c_int`, `ctypes.c_long`, or
`ctypes.c_longlong` depending on the platform.
The c_intp type is defined accordingly in `numpy.ctypeslib`.
The ctypes array contains the shape of the underlying array.
"""
return self.shape_as(_getintp_ctype())
@property
def strides(self):
"""
(c_intp*self.ndim): A ctypes array of length self.ndim where
the basetype is the same as for the shape attribute. This ctypes array
contains the strides information from the underlying array. This strides
information is important for showing how many bytes must be jumped to
get to the next element in the array.
"""
return self.strides_as(_getintp_ctype())
@property
def _as_parameter_(self):
"""
Overrides the ctypes semi-magic method
Enables `c_func(some_array.ctypes)`
"""
return self.data_as(ctypes.c_void_p)
# kept for compatibility
get_data = data.fget
get_shape = shape.fget
get_strides = strides.fget
get_as_parameter = _as_parameter_.fget
def _newnames(datatype, order):
"""
Given a datatype and an order object, return a new names tuple, with the
order indicated
"""
oldnames = datatype.names
nameslist = list(oldnames)
if isinstance(order, (str, unicode)):
order = [order]
seen = set()
if isinstance(order, (list, tuple)):
for name in order:
try:
nameslist.remove(name)
except ValueError:
if name in seen:
raise ValueError("duplicate field name: %s" % (name,))
else:
raise ValueError("unknown field name: %s" % (name,))
seen.add(name)
return tuple(list(order) + nameslist)
raise ValueError("unsupported order value: %s" % (order,))
def _copy_fields(ary):
"""Return copy of structured array with padding between fields removed.
Parameters
----------
ary : ndarray
Structured array from which to remove padding bytes
Returns
-------
ary_copy : ndarray
Copy of ary with padding bytes removed
"""
dt = ary.dtype
copy_dtype = {'names': dt.names,
'formats': [dt.fields[name][0] for name in dt.names]}
return array(ary, dtype=copy_dtype, copy=True)
def _getfield_is_safe(oldtype, newtype, offset):
""" Checks safety of getfield for object arrays.
As in _view_is_safe, we need to check that memory containing objects is not
reinterpreted as a non-object datatype and vice versa.
Parameters
----------
oldtype : data-type
Data type of the original ndarray.
newtype : data-type
Data type of the field being accessed by ndarray.getfield
offset : int
Offset of the field being accessed by ndarray.getfield
Raises
------
TypeError
If the field access is invalid
"""
if newtype.hasobject or oldtype.hasobject:
if offset == 0 and newtype == oldtype:
return
if oldtype.names is not None:
for name in oldtype.names:
if (oldtype.fields[name][1] == offset and
oldtype.fields[name][0] == newtype):
return
raise TypeError("Cannot get/set field of an object array")
return
def _view_is_safe(oldtype, newtype):
""" Checks safety of a view involving object arrays, for example when
doing::
np.zeros(10, dtype=oldtype).view(newtype)
Parameters
----------
oldtype : data-type
Data type of original ndarray
newtype : data-type
Data type of the view
Raises
------
TypeError
If the new type is incompatible with the old type.
"""
# if the types are equivalent, there is no problem.
# for example: dtype((np.record, 'i4,i4')) == dtype((np.void, 'i4,i4'))
if oldtype == newtype:
return
if newtype.hasobject or oldtype.hasobject:
raise TypeError("Cannot change data-type for object array.")
return
# Given a string containing a PEP 3118 format specifier,
# construct a NumPy dtype
_pep3118_native_map = {
'?': '?',
'c': 'S1',
'b': 'b',
'B': 'B',
'h': 'h',
'H': 'H',
'i': 'i',
'I': 'I',
'l': 'l',
'L': 'L',
'q': 'q',
'Q': 'Q',
'e': 'e',
'f': 'f',
'd': 'd',
'g': 'g',
'Zf': 'F',
'Zd': 'D',
'Zg': 'G',
's': 'S',
'w': 'U',
'O': 'O',
'x': 'V', # padding
}
_pep3118_native_typechars = ''.join(_pep3118_native_map.keys())
_pep3118_standard_map = {
'?': '?',
'c': 'S1',
'b': 'b',
'B': 'B',
'h': 'i2',
'H': 'u2',
'i': 'i4',
'I': 'u4',
'l': 'i4',
'L': 'u4',
'q': 'i8',
'Q': 'u8',
'e': 'f2',
'f': 'f',
'd': 'd',
'Zf': 'F',
'Zd': 'D',
's': 'S',
'w': 'U',
'O': 'O',
'x': 'V', # padding
}
_pep3118_standard_typechars = ''.join(_pep3118_standard_map.keys())
_pep3118_unsupported_map = {
'u': 'UCS-2 strings',
'&': 'pointers',
't': 'bitfields',
'X': 'function pointers',
}
class _Stream(object):
def __init__(self, s):
self.s = s
self.byteorder = '@'
def advance(self, n):
res = self.s[:n]
self.s = self.s[n:]
return res
def consume(self, c):
if self.s[:len(c)] == c:
self.advance(len(c))
return True
return False
def consume_until(self, c):
if callable(c):
i = 0
while i < len(self.s) and not c(self.s[i]):
i = i + 1
return self.advance(i)
else:
i = self.s.index(c)
res = self.advance(i)
self.advance(len(c))
return res
@property
def next(self):
return self.s[0]
def __bool__(self):
return bool(self.s)
__nonzero__ = __bool__
def _dtype_from_pep3118(spec):
stream = _Stream(spec)
dtype, align = __dtype_from_pep3118(stream, is_subdtype=False)
return dtype
def __dtype_from_pep3118(stream, is_subdtype):
field_spec = dict(
names=[],
formats=[],
offsets=[],
itemsize=0
)
offset = 0
common_alignment = 1
is_padding = False
# Parse spec
while stream:
value = None
# End of structure, bail out to upper level
if stream.consume('}'):
break
# Sub-arrays (1)
shape = None
if stream.consume('('):
shape = stream.consume_until(')')
shape = tuple(map(int, shape.split(',')))
# Byte order
if stream.next in ('@', '=', '<', '>', '^', '!'):
byteorder = stream.advance(1)
if byteorder == '!':
byteorder = '>'
stream.byteorder = byteorder
# Byte order characters also control native vs. standard type sizes
if stream.byteorder in ('@', '^'):
type_map = _pep3118_native_map
type_map_chars = _pep3118_native_typechars
else:
type_map = _pep3118_standard_map
type_map_chars = _pep3118_standard_typechars
# Item sizes
itemsize_str = stream.consume_until(lambda c: not c.isdigit())
if itemsize_str:
itemsize = int(itemsize_str)
else:
itemsize = 1
# Data types
is_padding = False
if stream.consume('T{'):
value, align = __dtype_from_pep3118(
stream, is_subdtype=True)
elif stream.next in type_map_chars:
if stream.next == 'Z':
typechar = stream.advance(2)
else:
typechar = stream.advance(1)
is_padding = (typechar == 'x')
dtypechar = type_map[typechar]
if dtypechar in 'USV':
dtypechar += '%d' % itemsize
itemsize = 1
numpy_byteorder = {'@': '=', '^': '='}.get(
stream.byteorder, stream.byteorder)
value = dtype(numpy_byteorder + dtypechar)
align = value.alignment
elif stream.next in _pep3118_unsupported_map:
desc = _pep3118_unsupported_map[stream.next]
raise NotImplementedError(
"Unrepresentable PEP 3118 data type {!r} ({})"
.format(stream.next, desc))
else:
raise ValueError("Unknown PEP 3118 data type specifier %r" % stream.s)
#
# Native alignment may require padding
#
# Here we assume that the presence of a '@' character implicitly implies
# that the start of the array is *already* aligned.
#
extra_offset = 0
if stream.byteorder == '@':
start_padding = (-offset) % align
intra_padding = (-value.itemsize) % align
offset += start_padding
if intra_padding != 0:
if itemsize > 1 or (shape is not None and _prod(shape) > 1):
# Inject internal padding to the end of the sub-item
value = _add_trailing_padding(value, intra_padding)
else:
# We can postpone the injection of internal padding,
# as the item appears at most once
extra_offset += intra_padding
# Update common alignment
common_alignment = _lcm(align, common_alignment)
# Convert itemsize to sub-array
if itemsize != 1:
value = dtype((value, (itemsize,)))
# Sub-arrays (2)
if shape is not None:
value = dtype((value, shape))
# Field name
if stream.consume(':'):
name = stream.consume_until(':')
else:
name = None
if not (is_padding and name is None):
if name is not None and name in field_spec['names']:
raise RuntimeError("Duplicate field name '%s' in PEP3118 format"
% name)
field_spec['names'].append(name)
field_spec['formats'].append(value)
field_spec['offsets'].append(offset)
offset += value.itemsize
offset += extra_offset
field_spec['itemsize'] = offset
# extra final padding for aligned types
if stream.byteorder == '@':
field_spec['itemsize'] += (-offset) % common_alignment
# Check if this was a simple 1-item type, and unwrap it
if (field_spec['names'] == [None]
and field_spec['offsets'][0] == 0
and field_spec['itemsize'] == field_spec['formats'][0].itemsize
and not is_subdtype):
ret = field_spec['formats'][0]
else:
_fix_names(field_spec)
ret = dtype(field_spec)
# Finished
return ret, common_alignment
def _fix_names(field_spec):
""" Replace names which are None with the next unused f%d name """
names = field_spec['names']
for i, name in enumerate(names):
if name is not None:
continue
j = 0
while True:
name = 'f{}'.format(j)
if name not in names:
break
j = j + 1
names[i] = name
def _add_trailing_padding(value, padding):
"""Inject the specified number of padding bytes at the end of a dtype"""
if value.fields is None:
field_spec = dict(
names=['f0'],
formats=[value],
offsets=[0],
itemsize=value.itemsize
)
else:
fields = value.fields
names = value.names
field_spec = dict(
names=names,
formats=[fields[name][0] for name in names],
offsets=[fields[name][1] for name in names],
itemsize=value.itemsize
)
field_spec['itemsize'] += padding
return dtype(field_spec)
def _prod(a):
p = 1
for x in a:
p *= x
return p
def _gcd(a, b):
"""Calculate the greatest common divisor of a and b"""
while b:
a, b = b, a % b
return a
def _lcm(a, b):
return a // _gcd(a, b) * b
def array_ufunc_errmsg_formatter(dummy, ufunc, method, *inputs, **kwargs):
""" Format the error message for when __array_ufunc__ gives up. """
args_string = ', '.join(['{!r}'.format(arg) for arg in inputs] +
['{}={!r}'.format(k, v)
for k, v in kwargs.items()])
args = inputs + kwargs.get('out', ())
types_string = ', '.join(repr(type(arg).__name__) for arg in args)
return ('operand type(s) all returned NotImplemented from '
'__array_ufunc__({!r}, {!r}, {}): {}'
.format(ufunc, method, args_string, types_string))
def array_function_errmsg_formatter(public_api, types):
""" Format the error message for when __array_ufunc__ gives up. """
func_name = '{}.{}'.format(public_api.__module__, public_api.__name__)
return ("no implementation found for '{}' on types that implement "
'__array_function__: {}'.format(func_name, list(types)))
def _ufunc_doc_signature_formatter(ufunc):
"""
Builds a signature string which resembles PEP 457
This is used to construct the first line of the docstring
"""
# input arguments are simple
if ufunc.nin == 1:
in_args = 'x'
else:
in_args = ', '.join('x{}'.format(i+1) for i in range(ufunc.nin))
# output arguments are both keyword or positional
if ufunc.nout == 0:
out_args = ', /, out=()'
elif ufunc.nout == 1:
out_args = ', /, out=None'
else:
out_args = '[, {positional}], / [, out={default}]'.format(
positional=', '.join(
'out{}'.format(i+1) for i in range(ufunc.nout)),
default=repr((None,)*ufunc.nout)
)
# keyword only args depend on whether this is a gufunc
kwargs = (
", casting='same_kind'"
", order='K'"
", dtype=None"
", subok=True"
"[, signature"
", extobj]"
)
if ufunc.signature is None:
kwargs = ", where=True" + kwargs
# join all the parts together
return '{name}({in_args}{out_args}, *{kwargs})'.format(
name=ufunc.__name__,
in_args=in_args,
out_args=out_args,
kwargs=kwargs
)
def npy_ctypes_check(cls):
# determine if a class comes from ctypes, in order to work around
# a bug in the buffer protocol for those objects, bpo-10746
try:
# ctypes class are new-style, so have an __mro__. This probably fails
# for ctypes classes with multiple inheritance.
if IS_PYPY:
# (..., _ctypes.basics._CData, Bufferable, object)
ctype_base = cls.__mro__[-3]
else:
# # (..., _ctypes._CData, object)
ctype_base = cls.__mro__[-2]
# right now, they're part of the _ctypes module
return 'ctypes' in ctype_base.__module__
except Exception:
return False
class recursive(object):
'''
A decorator class for recursive nested functions.
Naive recursive nested functions hold a reference to themselves:
def outer(*args):
def stringify_leaky(arg0, *arg1):
if len(arg1) > 0:
return stringify_leaky(*arg1) # <- HERE
return str(arg0)
stringify_leaky(*args)
This design pattern creates a reference cycle that is difficult for a
garbage collector to resolve. The decorator class prevents the
cycle by passing the nested function in as an argument `self`:
def outer(*args):
@recursive
def stringify(self, arg0, *arg1):
if len(arg1) > 0:
return self(*arg1)
return str(arg0)
stringify(*args)
'''
def __init__(self, func):
self.func = func
def __call__(self, *args, **kwargs):
return self.func(self, *args, **kwargs)

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"""
Array methods which are called by both the C-code for the method
and the Python code for the NumPy-namespace function
"""
from __future__ import division, absolute_import, print_function
import warnings
from numpy.core import multiarray as mu
from numpy.core import umath as um
from numpy.core._asarray import asanyarray
from numpy.core import numerictypes as nt
from numpy.core import _exceptions
from numpy._globals import _NoValue
from numpy.compat import pickle, os_fspath, contextlib_nullcontext
# save those O(100) nanoseconds!
umr_maximum = um.maximum.reduce
umr_minimum = um.minimum.reduce
umr_sum = um.add.reduce
umr_prod = um.multiply.reduce
umr_any = um.logical_or.reduce
umr_all = um.logical_and.reduce
# avoid keyword arguments to speed up parsing, saves about 15%-20% for very
# small reductions
def _amax(a, axis=None, out=None, keepdims=False,
initial=_NoValue, where=True):
return umr_maximum(a, axis, None, out, keepdims, initial, where)
def _amin(a, axis=None, out=None, keepdims=False,
initial=_NoValue, where=True):
return umr_minimum(a, axis, None, out, keepdims, initial, where)
def _sum(a, axis=None, dtype=None, out=None, keepdims=False,
initial=_NoValue, where=True):
return umr_sum(a, axis, dtype, out, keepdims, initial, where)
def _prod(a, axis=None, dtype=None, out=None, keepdims=False,
initial=_NoValue, where=True):
return umr_prod(a, axis, dtype, out, keepdims, initial, where)
def _any(a, axis=None, dtype=None, out=None, keepdims=False):
return umr_any(a, axis, dtype, out, keepdims)
def _all(a, axis=None, dtype=None, out=None, keepdims=False):
return umr_all(a, axis, dtype, out, keepdims)
def _count_reduce_items(arr, axis):
if axis is None:
axis = tuple(range(arr.ndim))
if not isinstance(axis, tuple):
axis = (axis,)
items = 1
for ax in axis:
items *= arr.shape[ax]
return items
# Numpy 1.17.0, 2019-02-24
# Various clip behavior deprecations, marked with _clip_dep as a prefix.
def _clip_dep_is_scalar_nan(a):
# guarded to protect circular imports
from numpy.core.fromnumeric import ndim
if ndim(a) != 0:
return False
try:
return um.isnan(a)
except TypeError:
return False
def _clip_dep_is_byte_swapped(a):
if isinstance(a, mu.ndarray):
return not a.dtype.isnative
return False
def _clip_dep_invoke_with_casting(ufunc, *args, out=None, casting=None, **kwargs):
# normal path
if casting is not None:
return ufunc(*args, out=out, casting=casting, **kwargs)
# try to deal with broken casting rules
try:
return ufunc(*args, out=out, **kwargs)
except _exceptions._UFuncOutputCastingError as e:
# Numpy 1.17.0, 2019-02-24
warnings.warn(
"Converting the output of clip from {!r} to {!r} is deprecated. "
"Pass `casting=\"unsafe\"` explicitly to silence this warning, or "
"correct the type of the variables.".format(e.from_, e.to),
DeprecationWarning,
stacklevel=2
)
return ufunc(*args, out=out, casting="unsafe", **kwargs)
def _clip(a, min=None, max=None, out=None, *, casting=None, **kwargs):
if min is None and max is None:
raise ValueError("One of max or min must be given")
# Numpy 1.17.0, 2019-02-24
# This deprecation probably incurs a substantial slowdown for small arrays,
# it will be good to get rid of it.
if not _clip_dep_is_byte_swapped(a) and not _clip_dep_is_byte_swapped(out):
using_deprecated_nan = False
if _clip_dep_is_scalar_nan(min):
min = -float('inf')
using_deprecated_nan = True
if _clip_dep_is_scalar_nan(max):
max = float('inf')
using_deprecated_nan = True
if using_deprecated_nan:
warnings.warn(
"Passing `np.nan` to mean no clipping in np.clip has always "
"been unreliable, and is now deprecated. "
"In future, this will always return nan, like it already does "
"when min or max are arrays that contain nan. "
"To skip a bound, pass either None or an np.inf of an "
"appropriate sign.",
DeprecationWarning,
stacklevel=2
)
if min is None:
return _clip_dep_invoke_with_casting(
um.minimum, a, max, out=out, casting=casting, **kwargs)
elif max is None:
return _clip_dep_invoke_with_casting(
um.maximum, a, min, out=out, casting=casting, **kwargs)
else:
return _clip_dep_invoke_with_casting(
um.clip, a, min, max, out=out, casting=casting, **kwargs)
def _mean(a, axis=None, dtype=None, out=None, keepdims=False):
arr = asanyarray(a)
is_float16_result = False
rcount = _count_reduce_items(arr, axis)
# Make this warning show up first
if rcount == 0:
warnings.warn("Mean of empty slice.", RuntimeWarning, stacklevel=2)
# Cast bool, unsigned int, and int to float64 by default
if dtype is None:
if issubclass(arr.dtype.type, (nt.integer, nt.bool_)):
dtype = mu.dtype('f8')
elif issubclass(arr.dtype.type, nt.float16):
dtype = mu.dtype('f4')
is_float16_result = True
ret = umr_sum(arr, axis, dtype, out, keepdims)
if isinstance(ret, mu.ndarray):
ret = um.true_divide(
ret, rcount, out=ret, casting='unsafe', subok=False)
if is_float16_result and out is None:
ret = arr.dtype.type(ret)
elif hasattr(ret, 'dtype'):
if is_float16_result:
ret = arr.dtype.type(ret / rcount)
else:
ret = ret.dtype.type(ret / rcount)
else:
ret = ret / rcount
return ret
def _var(a, axis=None, dtype=None, out=None, ddof=0, keepdims=False):
arr = asanyarray(a)
rcount = _count_reduce_items(arr, axis)
# Make this warning show up on top.
if ddof >= rcount:
warnings.warn("Degrees of freedom <= 0 for slice", RuntimeWarning,
stacklevel=2)
# Cast bool, unsigned int, and int to float64 by default
if dtype is None and issubclass(arr.dtype.type, (nt.integer, nt.bool_)):
dtype = mu.dtype('f8')
# Compute the mean.
# Note that if dtype is not of inexact type then arraymean will
# not be either.
arrmean = umr_sum(arr, axis, dtype, keepdims=True)
if isinstance(arrmean, mu.ndarray):
arrmean = um.true_divide(
arrmean, rcount, out=arrmean, casting='unsafe', subok=False)
else:
arrmean = arrmean.dtype.type(arrmean / rcount)
# Compute sum of squared deviations from mean
# Note that x may not be inexact and that we need it to be an array,
# not a scalar.
x = asanyarray(arr - arrmean)
if issubclass(arr.dtype.type, (nt.floating, nt.integer)):
x = um.multiply(x, x, out=x)
else:
x = um.multiply(x, um.conjugate(x), out=x).real
ret = umr_sum(x, axis, dtype, out, keepdims)
# Compute degrees of freedom and make sure it is not negative.
rcount = max([rcount - ddof, 0])
# divide by degrees of freedom
if isinstance(ret, mu.ndarray):
ret = um.true_divide(
ret, rcount, out=ret, casting='unsafe', subok=False)
elif hasattr(ret, 'dtype'):
ret = ret.dtype.type(ret / rcount)
else:
ret = ret / rcount
return ret
def _std(a, axis=None, dtype=None, out=None, ddof=0, keepdims=False):
ret = _var(a, axis=axis, dtype=dtype, out=out, ddof=ddof,
keepdims=keepdims)
if isinstance(ret, mu.ndarray):
ret = um.sqrt(ret, out=ret)
elif hasattr(ret, 'dtype'):
ret = ret.dtype.type(um.sqrt(ret))
else:
ret = um.sqrt(ret)
return ret
def _ptp(a, axis=None, out=None, keepdims=False):
return um.subtract(
umr_maximum(a, axis, None, out, keepdims),
umr_minimum(a, axis, None, None, keepdims),
out
)
def _dump(self, file, protocol=2):
if hasattr(file, 'write'):
ctx = contextlib_nullcontext(file)
else:
ctx = open(os_fspath(file), "wb")
with ctx as f:
pickle.dump(self, f, protocol=protocol)
def _dumps(self, protocol=2):
return pickle.dumps(self, protocol=protocol)

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"""
String-handling utilities to avoid locale-dependence.
Used primarily to generate type name aliases.
"""
# "import string" is costly to import!
# Construct the translation tables directly
# "A" = chr(65), "a" = chr(97)
_all_chars = [chr(_m) for _m in range(256)]
_ascii_upper = _all_chars[65:65+26]
_ascii_lower = _all_chars[97:97+26]
LOWER_TABLE = "".join(_all_chars[:65] + _ascii_lower + _all_chars[65+26:])
UPPER_TABLE = "".join(_all_chars[:97] + _ascii_upper + _all_chars[97+26:])
def english_lower(s):
""" Apply English case rules to convert ASCII strings to all lower case.
This is an internal utility function to replace calls to str.lower() such
that we can avoid changing behavior with changing locales. In particular,
Turkish has distinct dotted and dotless variants of the Latin letter "I" in
both lowercase and uppercase. Thus, "I".lower() != "i" in a "tr" locale.
Parameters
----------
s : str
Returns
-------
lowered : str
Examples
--------
>>> from numpy.core.numerictypes import english_lower
>>> english_lower('ABCDEFGHIJKLMNOPQRSTUVWXYZabcdefghijklmnopqrstuvwxyz0123456789_')
'abcdefghijklmnopqrstuvwxyzabcdefghijklmnopqrstuvwxyz0123456789_'
>>> english_lower('')
''
"""
lowered = s.translate(LOWER_TABLE)
return lowered
def english_upper(s):
""" Apply English case rules to convert ASCII strings to all upper case.
This is an internal utility function to replace calls to str.upper() such
that we can avoid changing behavior with changing locales. In particular,
Turkish has distinct dotted and dotless variants of the Latin letter "I" in
both lowercase and uppercase. Thus, "i".upper() != "I" in a "tr" locale.
Parameters
----------
s : str
Returns
-------
uppered : str
Examples
--------
>>> from numpy.core.numerictypes import english_upper
>>> english_upper('ABCDEFGHIJKLMNOPQRSTUVWXYZabcdefghijklmnopqrstuvwxyz0123456789_')
'ABCDEFGHIJKLMNOPQRSTUVWXYZABCDEFGHIJKLMNOPQRSTUVWXYZ0123456789_'
>>> english_upper('')
''
"""
uppered = s.translate(UPPER_TABLE)
return uppered
def english_capitalize(s):
""" Apply English case rules to convert the first character of an ASCII
string to upper case.
This is an internal utility function to replace calls to str.capitalize()
such that we can avoid changing behavior with changing locales.
Parameters
----------
s : str
Returns
-------
capitalized : str
Examples
--------
>>> from numpy.core.numerictypes import english_capitalize
>>> english_capitalize('int8')
'Int8'
>>> english_capitalize('Int8')
'Int8'
>>> english_capitalize('')
''
"""
if s:
return english_upper(s[0]) + s[1:]
else:
return s

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"""
Due to compatibility, numpy has a very large number of different naming
conventions for the scalar types (those subclassing from `numpy.generic`).
This file produces a convoluted set of dictionaries mapping names to types,
and sometimes other mappings too.
.. data:: allTypes
A dictionary of names to types that will be exposed as attributes through
``np.core.numerictypes.*``
.. data:: sctypeDict
Similar to `allTypes`, but maps a broader set of aliases to their types.
.. data:: sctypeNA
NumArray-compatible names for the scalar types. Contains not only
``name: type`` mappings, but ``char: name`` mappings too.
.. deprecated:: 1.16
.. data:: sctypes
A dictionary keyed by a "type group" string, providing a list of types
under that group.
"""
import warnings
import sys
from numpy.compat import unicode
from numpy._globals import VisibleDeprecationWarning
from numpy.core._string_helpers import english_lower, english_capitalize
from numpy.core.multiarray import typeinfo, dtype
from numpy.core._dtype import _kind_name
sctypeDict = {} # Contains all leaf-node scalar types with aliases
class TypeNADict(dict):
def __getitem__(self, key):
# 2018-06-24, 1.16
warnings.warn('sctypeNA and typeNA will be removed in v1.18 '
'of numpy', VisibleDeprecationWarning, stacklevel=2)
return dict.__getitem__(self, key)
def get(self, key, default=None):
# 2018-06-24, 1.16
warnings.warn('sctypeNA and typeNA will be removed in v1.18 '
'of numpy', VisibleDeprecationWarning, stacklevel=2)
return dict.get(self, key, default)
sctypeNA = TypeNADict() # Contails all leaf-node types -> numarray type equivalences
allTypes = {} # Collect the types we will add to the module
# separate the actual type info from the abstract base classes
_abstract_types = {}
_concrete_typeinfo = {}
for k, v in typeinfo.items():
# make all the keys lowercase too
k = english_lower(k)
if isinstance(v, type):
_abstract_types[k] = v
else:
_concrete_typeinfo[k] = v
_concrete_types = {v.type for k, v in _concrete_typeinfo.items()}
def _bits_of(obj):
try:
info = next(v for v in _concrete_typeinfo.values() if v.type is obj)
except StopIteration:
if obj in _abstract_types.values():
raise ValueError("Cannot count the bits of an abstract type")
# some third-party type - make a best-guess
return dtype(obj).itemsize * 8
else:
return info.bits
def bitname(obj):
"""Return a bit-width name for a given type object"""
bits = _bits_of(obj)
dt = dtype(obj)
char = dt.kind
base = _kind_name(dt)
if base == 'object':
bits = 0
if bits != 0:
char = "%s%d" % (char, bits // 8)
return base, bits, char
def _add_types():
for name, info in _concrete_typeinfo.items():
# define C-name and insert typenum and typechar references also
allTypes[name] = info.type
sctypeDict[name] = info.type
sctypeDict[info.char] = info.type
sctypeDict[info.num] = info.type
for name, cls in _abstract_types.items():
allTypes[name] = cls
_add_types()
# This is the priority order used to assign the bit-sized NPY_INTxx names, which
# must match the order in npy_common.h in order for NPY_INTxx and np.intxx to be
# consistent.
# If two C types have the same size, then the earliest one in this list is used
# as the sized name.
_int_ctypes = ['long', 'longlong', 'int', 'short', 'byte']
_uint_ctypes = list('u' + t for t in _int_ctypes)
def _add_aliases():
for name, info in _concrete_typeinfo.items():
# these are handled by _add_integer_aliases
if name in _int_ctypes or name in _uint_ctypes:
continue
# insert bit-width version for this class (if relevant)
base, bit, char = bitname(info.type)
myname = "%s%d" % (base, bit)
# ensure that (c)longdouble does not overwrite the aliases assigned to
# (c)double
if name in ('longdouble', 'clongdouble') and myname in allTypes:
continue
base_capitalize = english_capitalize(base)
if base == 'complex':
na_name = '%s%d' % (base_capitalize, bit//2)
elif base == 'bool':
na_name = base_capitalize
else:
na_name = "%s%d" % (base_capitalize, bit)
allTypes[myname] = info.type
# add mapping for both the bit name and the numarray name
sctypeDict[myname] = info.type
sctypeDict[na_name] = info.type
# add forward, reverse, and string mapping to numarray
sctypeNA[na_name] = info.type
sctypeNA[info.type] = na_name
sctypeNA[info.char] = na_name
sctypeDict[char] = info.type
sctypeNA[char] = na_name
_add_aliases()
def _add_integer_aliases():
seen_bits = set()
for i_ctype, u_ctype in zip(_int_ctypes, _uint_ctypes):
i_info = _concrete_typeinfo[i_ctype]
u_info = _concrete_typeinfo[u_ctype]
bits = i_info.bits # same for both
for info, charname, intname, Intname in [
(i_info,'i%d' % (bits//8,), 'int%d' % bits, 'Int%d' % bits),
(u_info,'u%d' % (bits//8,), 'uint%d' % bits, 'UInt%d' % bits)]:
if bits not in seen_bits:
# sometimes two different types have the same number of bits
# if so, the one iterated over first takes precedence
allTypes[intname] = info.type
sctypeDict[intname] = info.type
sctypeDict[Intname] = info.type
sctypeDict[charname] = info.type
sctypeNA[Intname] = info.type
sctypeNA[charname] = info.type
sctypeNA[info.type] = Intname
sctypeNA[info.char] = Intname
seen_bits.add(bits)
_add_integer_aliases()
# We use these later
void = allTypes['void']
#
# Rework the Python names (so that float and complex and int are consistent
# with Python usage)
#
def _set_up_aliases():
type_pairs = [('complex_', 'cdouble'),
('int0', 'intp'),
('uint0', 'uintp'),
('single', 'float'),
('csingle', 'cfloat'),
('singlecomplex', 'cfloat'),
('float_', 'double'),
('intc', 'int'),
('uintc', 'uint'),
('int_', 'long'),
('uint', 'ulong'),
('cfloat', 'cdouble'),
('longfloat', 'longdouble'),
('clongfloat', 'clongdouble'),
('longcomplex', 'clongdouble'),
('bool_', 'bool'),
('bytes_', 'string'),
('string_', 'string'),
('unicode_', 'unicode'),
('object_', 'object')]
if sys.version_info[0] >= 3:
type_pairs.extend([('str_', 'unicode')])
else:
type_pairs.extend([('str_', 'string')])
for alias, t in type_pairs:
allTypes[alias] = allTypes[t]
sctypeDict[alias] = sctypeDict[t]
# Remove aliases overriding python types and modules
to_remove = ['ulong', 'object', 'int', 'float',
'complex', 'bool', 'string', 'datetime', 'timedelta']
if sys.version_info[0] >= 3:
to_remove.extend(['bytes', 'str'])
else:
to_remove.extend(['unicode', 'long'])
for t in to_remove:
try:
del allTypes[t]
del sctypeDict[t]
except KeyError:
pass
_set_up_aliases()
sctypes = {'int': [],
'uint':[],
'float':[],
'complex':[],
'others':[bool, object, bytes, unicode, void]}
def _add_array_type(typename, bits):
try:
t = allTypes['%s%d' % (typename, bits)]
except KeyError:
pass
else:
sctypes[typename].append(t)
def _set_array_types():
ibytes = [1, 2, 4, 8, 16, 32, 64]
fbytes = [2, 4, 8, 10, 12, 16, 32, 64]
for bytes in ibytes:
bits = 8*bytes
_add_array_type('int', bits)
_add_array_type('uint', bits)
for bytes in fbytes:
bits = 8*bytes
_add_array_type('float', bits)
_add_array_type('complex', 2*bits)
_gi = dtype('p')
if _gi.type not in sctypes['int']:
indx = 0
sz = _gi.itemsize
_lst = sctypes['int']
while (indx < len(_lst) and sz >= _lst[indx](0).itemsize):
indx += 1
sctypes['int'].insert(indx, _gi.type)
sctypes['uint'].insert(indx, dtype('P').type)
_set_array_types()
# Add additional strings to the sctypeDict
_toadd = ['int', 'float', 'complex', 'bool', 'object']
if sys.version_info[0] >= 3:
_toadd.extend(['str', 'bytes', ('a', 'bytes_')])
else:
_toadd.extend(['string', ('str', 'string_'), 'unicode', ('a', 'string_')])
for name in _toadd:
if isinstance(name, tuple):
sctypeDict[name[0]] = allTypes[name[1]]
else:
sctypeDict[name] = allTypes['%s_' % name]
del _toadd, name

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@@ -0,0 +1,458 @@
"""
Functions for changing global ufunc configuration
This provides helpers which wrap `umath.geterrobj` and `umath.seterrobj`
"""
from __future__ import division, absolute_import, print_function
try:
# Accessing collections abstract classes from collections
# has been deprecated since Python 3.3
import collections.abc as collections_abc
except ImportError:
import collections as collections_abc
import contextlib
from .overrides import set_module
from .umath import (
UFUNC_BUFSIZE_DEFAULT,
ERR_IGNORE, ERR_WARN, ERR_RAISE, ERR_CALL, ERR_PRINT, ERR_LOG, ERR_DEFAULT,
SHIFT_DIVIDEBYZERO, SHIFT_OVERFLOW, SHIFT_UNDERFLOW, SHIFT_INVALID,
)
from . import umath
__all__ = [
"seterr", "geterr", "setbufsize", "getbufsize", "seterrcall", "geterrcall",
"errstate",
]
_errdict = {"ignore": ERR_IGNORE,
"warn": ERR_WARN,
"raise": ERR_RAISE,
"call": ERR_CALL,
"print": ERR_PRINT,
"log": ERR_LOG}
_errdict_rev = {value: key for key, value in _errdict.items()}
@set_module('numpy')
def seterr(all=None, divide=None, over=None, under=None, invalid=None):
"""
Set how floating-point errors are handled.
Note that operations on integer scalar types (such as `int16`) are
handled like floating point, and are affected by these settings.
Parameters
----------
all : {'ignore', 'warn', 'raise', 'call', 'print', 'log'}, optional
Set treatment for all types of floating-point errors at once:
- ignore: Take no action when the exception occurs.
- warn: Print a `RuntimeWarning` (via the Python `warnings` module).
- raise: Raise a `FloatingPointError`.
- call: Call a function specified using the `seterrcall` function.
- print: Print a warning directly to ``stdout``.
- log: Record error in a Log object specified by `seterrcall`.
The default is not to change the current behavior.
divide : {'ignore', 'warn', 'raise', 'call', 'print', 'log'}, optional
Treatment for division by zero.
over : {'ignore', 'warn', 'raise', 'call', 'print', 'log'}, optional
Treatment for floating-point overflow.
under : {'ignore', 'warn', 'raise', 'call', 'print', 'log'}, optional
Treatment for floating-point underflow.
invalid : {'ignore', 'warn', 'raise', 'call', 'print', 'log'}, optional
Treatment for invalid floating-point operation.
Returns
-------
old_settings : dict
Dictionary containing the old settings.
See also
--------
seterrcall : Set a callback function for the 'call' mode.
geterr, geterrcall, errstate
Notes
-----
The floating-point exceptions are defined in the IEEE 754 standard [1]_:
- Division by zero: infinite result obtained from finite numbers.
- Overflow: result too large to be expressed.
- Underflow: result so close to zero that some precision
was lost.
- Invalid operation: result is not an expressible number, typically
indicates that a NaN was produced.
.. [1] https://en.wikipedia.org/wiki/IEEE_754
Examples
--------
>>> old_settings = np.seterr(all='ignore') #seterr to known value
>>> np.seterr(over='raise')
{'divide': 'ignore', 'over': 'ignore', 'under': 'ignore', 'invalid': 'ignore'}
>>> np.seterr(**old_settings) # reset to default
{'divide': 'ignore', 'over': 'raise', 'under': 'ignore', 'invalid': 'ignore'}
>>> np.int16(32000) * np.int16(3)
30464
>>> old_settings = np.seterr(all='warn', over='raise')
>>> np.int16(32000) * np.int16(3)
Traceback (most recent call last):
File "<stdin>", line 1, in <module>
FloatingPointError: overflow encountered in short_scalars
>>> from collections import OrderedDict
>>> old_settings = np.seterr(all='print')
>>> OrderedDict(np.geterr())
OrderedDict([('divide', 'print'), ('over', 'print'), ('under', 'print'), ('invalid', 'print')])
>>> np.int16(32000) * np.int16(3)
30464
"""
pyvals = umath.geterrobj()
old = geterr()
if divide is None:
divide = all or old['divide']
if over is None:
over = all or old['over']
if under is None:
under = all or old['under']
if invalid is None:
invalid = all or old['invalid']
maskvalue = ((_errdict[divide] << SHIFT_DIVIDEBYZERO) +
(_errdict[over] << SHIFT_OVERFLOW) +
(_errdict[under] << SHIFT_UNDERFLOW) +
(_errdict[invalid] << SHIFT_INVALID))
pyvals[1] = maskvalue
umath.seterrobj(pyvals)
return old
@set_module('numpy')
def geterr():
"""
Get the current way of handling floating-point errors.
Returns
-------
res : dict
A dictionary with keys "divide", "over", "under", and "invalid",
whose values are from the strings "ignore", "print", "log", "warn",
"raise", and "call". The keys represent possible floating-point
exceptions, and the values define how these exceptions are handled.
See Also
--------
geterrcall, seterr, seterrcall
Notes
-----
For complete documentation of the types of floating-point exceptions and
treatment options, see `seterr`.
Examples
--------
>>> from collections import OrderedDict
>>> sorted(np.geterr().items())
[('divide', 'warn'), ('invalid', 'warn'), ('over', 'warn'), ('under', 'ignore')]
>>> np.arange(3.) / np.arange(3.)
array([nan, 1., 1.])
>>> oldsettings = np.seterr(all='warn', over='raise')
>>> OrderedDict(sorted(np.geterr().items()))
OrderedDict([('divide', 'warn'), ('invalid', 'warn'), ('over', 'raise'), ('under', 'warn')])
>>> np.arange(3.) / np.arange(3.)
array([nan, 1., 1.])
"""
maskvalue = umath.geterrobj()[1]
mask = 7
res = {}
val = (maskvalue >> SHIFT_DIVIDEBYZERO) & mask
res['divide'] = _errdict_rev[val]
val = (maskvalue >> SHIFT_OVERFLOW) & mask
res['over'] = _errdict_rev[val]
val = (maskvalue >> SHIFT_UNDERFLOW) & mask
res['under'] = _errdict_rev[val]
val = (maskvalue >> SHIFT_INVALID) & mask
res['invalid'] = _errdict_rev[val]
return res
@set_module('numpy')
def setbufsize(size):
"""
Set the size of the buffer used in ufuncs.
Parameters
----------
size : int
Size of buffer.
"""
if size > 10e6:
raise ValueError("Buffer size, %s, is too big." % size)
if size < 5:
raise ValueError("Buffer size, %s, is too small." % size)
if size % 16 != 0:
raise ValueError("Buffer size, %s, is not a multiple of 16." % size)
pyvals = umath.geterrobj()
old = getbufsize()
pyvals[0] = size
umath.seterrobj(pyvals)
return old
@set_module('numpy')
def getbufsize():
"""
Return the size of the buffer used in ufuncs.
Returns
-------
getbufsize : int
Size of ufunc buffer in bytes.
"""
return umath.geterrobj()[0]
@set_module('numpy')
def seterrcall(func):
"""
Set the floating-point error callback function or log object.
There are two ways to capture floating-point error messages. The first
is to set the error-handler to 'call', using `seterr`. Then, set
the function to call using this function.
The second is to set the error-handler to 'log', using `seterr`.
Floating-point errors then trigger a call to the 'write' method of
the provided object.
Parameters
----------
func : callable f(err, flag) or object with write method
Function to call upon floating-point errors ('call'-mode) or
object whose 'write' method is used to log such message ('log'-mode).
The call function takes two arguments. The first is a string describing
the type of error (such as "divide by zero", "overflow", "underflow",
or "invalid value"), and the second is the status flag. The flag is a
byte, whose four least-significant bits indicate the type of error, one
of "divide", "over", "under", "invalid"::
[0 0 0 0 divide over under invalid]
In other words, ``flags = divide + 2*over + 4*under + 8*invalid``.
If an object is provided, its write method should take one argument,
a string.
Returns
-------
h : callable, log instance or None
The old error handler.
See Also
--------
seterr, geterr, geterrcall
Examples
--------
Callback upon error:
>>> def err_handler(type, flag):
... print("Floating point error (%s), with flag %s" % (type, flag))
...
>>> saved_handler = np.seterrcall(err_handler)
>>> save_err = np.seterr(all='call')
>>> from collections import OrderedDict
>>> np.array([1, 2, 3]) / 0.0
Floating point error (divide by zero), with flag 1
array([inf, inf, inf])
>>> np.seterrcall(saved_handler)
<function err_handler at 0x...>
>>> OrderedDict(sorted(np.seterr(**save_err).items()))
OrderedDict([('divide', 'call'), ('invalid', 'call'), ('over', 'call'), ('under', 'call')])
Log error message:
>>> class Log(object):
... def write(self, msg):
... print("LOG: %s" % msg)
...
>>> log = Log()
>>> saved_handler = np.seterrcall(log)
>>> save_err = np.seterr(all='log')
>>> np.array([1, 2, 3]) / 0.0
LOG: Warning: divide by zero encountered in true_divide
array([inf, inf, inf])
>>> np.seterrcall(saved_handler)
<numpy.core.numeric.Log object at 0x...>
>>> OrderedDict(sorted(np.seterr(**save_err).items()))
OrderedDict([('divide', 'log'), ('invalid', 'log'), ('over', 'log'), ('under', 'log')])
"""
if func is not None and not isinstance(func, collections_abc.Callable):
if not hasattr(func, 'write') or not isinstance(func.write, collections_abc.Callable):
raise ValueError("Only callable can be used as callback")
pyvals = umath.geterrobj()
old = geterrcall()
pyvals[2] = func
umath.seterrobj(pyvals)
return old
@set_module('numpy')
def geterrcall():
"""
Return the current callback function used on floating-point errors.
When the error handling for a floating-point error (one of "divide",
"over", "under", or "invalid") is set to 'call' or 'log', the function
that is called or the log instance that is written to is returned by
`geterrcall`. This function or log instance has been set with
`seterrcall`.
Returns
-------
errobj : callable, log instance or None
The current error handler. If no handler was set through `seterrcall`,
``None`` is returned.
See Also
--------
seterrcall, seterr, geterr
Notes
-----
For complete documentation of the types of floating-point exceptions and
treatment options, see `seterr`.
Examples
--------
>>> np.geterrcall() # we did not yet set a handler, returns None
>>> oldsettings = np.seterr(all='call')
>>> def err_handler(type, flag):
... print("Floating point error (%s), with flag %s" % (type, flag))
>>> oldhandler = np.seterrcall(err_handler)
>>> np.array([1, 2, 3]) / 0.0
Floating point error (divide by zero), with flag 1
array([inf, inf, inf])
>>> cur_handler = np.geterrcall()
>>> cur_handler is err_handler
True
"""
return umath.geterrobj()[2]
class _unspecified(object):
pass
_Unspecified = _unspecified()
@set_module('numpy')
class errstate(contextlib.ContextDecorator):
"""
errstate(**kwargs)
Context manager for floating-point error handling.
Using an instance of `errstate` as a context manager allows statements in
that context to execute with a known error handling behavior. Upon entering
the context the error handling is set with `seterr` and `seterrcall`, and
upon exiting it is reset to what it was before.
.. versionchanged:: 1.17.0
`errstate` is also usable as a function decorator, saving
a level of indentation if an entire function is wrapped.
See :py:class:`contextlib.ContextDecorator` for more information.
Parameters
----------
kwargs : {divide, over, under, invalid}
Keyword arguments. The valid keywords are the possible floating-point
exceptions. Each keyword should have a string value that defines the
treatment for the particular error. Possible values are
{'ignore', 'warn', 'raise', 'call', 'print', 'log'}.
See Also
--------
seterr, geterr, seterrcall, geterrcall
Notes
-----
For complete documentation of the types of floating-point exceptions and
treatment options, see `seterr`.
Examples
--------
>>> from collections import OrderedDict
>>> olderr = np.seterr(all='ignore') # Set error handling to known state.
>>> np.arange(3) / 0.
array([nan, inf, inf])
>>> with np.errstate(divide='warn'):
... np.arange(3) / 0.
array([nan, inf, inf])
>>> np.sqrt(-1)
nan
>>> with np.errstate(invalid='raise'):
... np.sqrt(-1)
Traceback (most recent call last):
File "<stdin>", line 2, in <module>
FloatingPointError: invalid value encountered in sqrt
Outside the context the error handling behavior has not changed:
>>> OrderedDict(sorted(np.geterr().items()))
OrderedDict([('divide', 'ignore'), ('invalid', 'ignore'), ('over', 'ignore'), ('under', 'ignore')])
"""
# Note that we don't want to run the above doctests because they will fail
# without a from __future__ import with_statement
def __init__(self, **kwargs):
self.call = kwargs.pop('call', _Unspecified)
self.kwargs = kwargs
def __enter__(self):
self.oldstate = seterr(**self.kwargs)
if self.call is not _Unspecified:
self.oldcall = seterrcall(self.call)
def __exit__(self, *exc_info):
seterr(**self.oldstate)
if self.call is not _Unspecified:
seterrcall(self.oldcall)
def _setdef():
defval = [UFUNC_BUFSIZE_DEFAULT, ERR_DEFAULT, None]
umath.seterrobj(defval)
# set the default values
_setdef()

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"""Simple script to compute the api hash of the current API.
The API has is defined by numpy_api_order and ufunc_api_order.
"""
from __future__ import division, absolute_import, print_function
from os.path import dirname
from code_generators.genapi import fullapi_hash
from code_generators.numpy_api import full_api
if __name__ == '__main__':
curdir = dirname(__file__)
print(fullapi_hash(full_api))

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from __future__ import division, absolute_import, print_function
import functools
import warnings
import operator
import types
from . import numeric as _nx
from .numeric import (result_type, NaN, shares_memory, MAY_SHARE_BOUNDS,
TooHardError, asanyarray, ndim)
from numpy.core.multiarray import add_docstring
from numpy.core import overrides
__all__ = ['logspace', 'linspace', 'geomspace']
array_function_dispatch = functools.partial(
overrides.array_function_dispatch, module='numpy')
def _linspace_dispatcher(start, stop, num=None, endpoint=None, retstep=None,
dtype=None, axis=None):
return (start, stop)
@array_function_dispatch(_linspace_dispatcher)
def linspace(start, stop, num=50, endpoint=True, retstep=False, dtype=None,
axis=0):
"""
Return evenly spaced numbers over a specified interval.
Returns `num` evenly spaced samples, calculated over the
interval [`start`, `stop`].
The endpoint of the interval can optionally be excluded.
.. versionchanged:: 1.16.0
Non-scalar `start` and `stop` are now supported.
Parameters
----------
start : array_like
The starting value of the sequence.
stop : array_like
The end value of the sequence, unless `endpoint` is set to False.
In that case, the sequence consists of all but the last of ``num + 1``
evenly spaced samples, so that `stop` is excluded. Note that the step
size changes when `endpoint` is False.
num : int, optional
Number of samples to generate. Default is 50. Must be non-negative.
endpoint : bool, optional
If True, `stop` is the last sample. Otherwise, it is not included.
Default is True.
retstep : bool, optional
If True, return (`samples`, `step`), where `step` is the spacing
between samples.
dtype : dtype, optional
The type of the output array. If `dtype` is not given, infer the data
type from the other input arguments.
.. versionadded:: 1.9.0
axis : int, optional
The axis in the result to store the samples. Relevant only if start
or stop are array-like. By default (0), the samples will be along a
new axis inserted at the beginning. Use -1 to get an axis at the end.
.. versionadded:: 1.16.0
Returns
-------
samples : ndarray
There are `num` equally spaced samples in the closed interval
``[start, stop]`` or the half-open interval ``[start, stop)``
(depending on whether `endpoint` is True or False).
step : float, optional
Only returned if `retstep` is True
Size of spacing between samples.
See Also
--------
arange : Similar to `linspace`, but uses a step size (instead of the
number of samples).
geomspace : Similar to `linspace`, but with numbers spaced evenly on a log
scale (a geometric progression).
logspace : Similar to `geomspace`, but with the end points specified as
logarithms.
Examples
--------
>>> np.linspace(2.0, 3.0, num=5)
array([2. , 2.25, 2.5 , 2.75, 3. ])
>>> np.linspace(2.0, 3.0, num=5, endpoint=False)
array([2. , 2.2, 2.4, 2.6, 2.8])
>>> np.linspace(2.0, 3.0, num=5, retstep=True)
(array([2. , 2.25, 2.5 , 2.75, 3. ]), 0.25)
Graphical illustration:
>>> import matplotlib.pyplot as plt
>>> N = 8
>>> y = np.zeros(N)
>>> x1 = np.linspace(0, 10, N, endpoint=True)
>>> x2 = np.linspace(0, 10, N, endpoint=False)
>>> plt.plot(x1, y, 'o')
[<matplotlib.lines.Line2D object at 0x...>]
>>> plt.plot(x2, y + 0.5, 'o')
[<matplotlib.lines.Line2D object at 0x...>]
>>> plt.ylim([-0.5, 1])
(-0.5, 1)
>>> plt.show()
"""
try:
num = operator.index(num)
except TypeError:
raise TypeError(
"object of type {} cannot be safely interpreted as an integer."
.format(type(num)))
if num < 0:
raise ValueError("Number of samples, %s, must be non-negative." % num)
div = (num - 1) if endpoint else num
# Convert float/complex array scalars to float, gh-3504
# and make sure one can use variables that have an __array_interface__, gh-6634
start = asanyarray(start) * 1.0
stop = asanyarray(stop) * 1.0
dt = result_type(start, stop, float(num))
if dtype is None:
dtype = dt
delta = stop - start
y = _nx.arange(0, num, dtype=dt).reshape((-1,) + (1,) * ndim(delta))
# In-place multiplication y *= delta/div is faster, but prevents the multiplicant
# from overriding what class is produced, and thus prevents, e.g. use of Quantities,
# see gh-7142. Hence, we multiply in place only for standard scalar types.
_mult_inplace = _nx.isscalar(delta)
if div > 0:
step = delta / div
if _nx.any(step == 0):
# Special handling for denormal numbers, gh-5437
y /= div
if _mult_inplace:
y *= delta
else:
y = y * delta
else:
if _mult_inplace:
y *= step
else:
y = y * step
else:
# sequences with 0 items or 1 item with endpoint=True (i.e. div <= 0)
# have an undefined step
step = NaN
# Multiply with delta to allow possible override of output class.
y = y * delta
y += start
if endpoint and num > 1:
y[-1] = stop
if axis != 0:
y = _nx.moveaxis(y, 0, axis)
if retstep:
return y.astype(dtype, copy=False), step
else:
return y.astype(dtype, copy=False)
def _logspace_dispatcher(start, stop, num=None, endpoint=None, base=None,
dtype=None, axis=None):
return (start, stop)
@array_function_dispatch(_logspace_dispatcher)
def logspace(start, stop, num=50, endpoint=True, base=10.0, dtype=None,
axis=0):
"""
Return numbers spaced evenly on a log scale.
In linear space, the sequence starts at ``base ** start``
(`base` to the power of `start`) and ends with ``base ** stop``
(see `endpoint` below).
.. versionchanged:: 1.16.0
Non-scalar `start` and `stop` are now supported.
Parameters
----------
start : array_like
``base ** start`` is the starting value of the sequence.
stop : array_like
``base ** stop`` is the final value of the sequence, unless `endpoint`
is False. In that case, ``num + 1`` values are spaced over the
interval in log-space, of which all but the last (a sequence of
length `num`) are returned.
num : integer, optional
Number of samples to generate. Default is 50.
endpoint : boolean, optional
If true, `stop` is the last sample. Otherwise, it is not included.
Default is True.
base : float, optional
The base of the log space. The step size between the elements in
``ln(samples) / ln(base)`` (or ``log_base(samples)``) is uniform.
Default is 10.0.
dtype : dtype
The type of the output array. If `dtype` is not given, infer the data
type from the other input arguments.
axis : int, optional
The axis in the result to store the samples. Relevant only if start
or stop are array-like. By default (0), the samples will be along a
new axis inserted at the beginning. Use -1 to get an axis at the end.
.. versionadded:: 1.16.0
Returns
-------
samples : ndarray
`num` samples, equally spaced on a log scale.
See Also
--------
arange : Similar to linspace, with the step size specified instead of the
number of samples. Note that, when used with a float endpoint, the
endpoint may or may not be included.
linspace : Similar to logspace, but with the samples uniformly distributed
in linear space, instead of log space.
geomspace : Similar to logspace, but with endpoints specified directly.
Notes
-----
Logspace is equivalent to the code
>>> y = np.linspace(start, stop, num=num, endpoint=endpoint)
... # doctest: +SKIP
>>> power(base, y).astype(dtype)
... # doctest: +SKIP
Examples
--------
>>> np.logspace(2.0, 3.0, num=4)
array([ 100. , 215.443469 , 464.15888336, 1000. ])
>>> np.logspace(2.0, 3.0, num=4, endpoint=False)
array([100. , 177.827941 , 316.22776602, 562.34132519])
>>> np.logspace(2.0, 3.0, num=4, base=2.0)
array([4. , 5.0396842 , 6.34960421, 8. ])
Graphical illustration:
>>> import matplotlib.pyplot as plt
>>> N = 10
>>> x1 = np.logspace(0.1, 1, N, endpoint=True)
>>> x2 = np.logspace(0.1, 1, N, endpoint=False)
>>> y = np.zeros(N)
>>> plt.plot(x1, y, 'o')
[<matplotlib.lines.Line2D object at 0x...>]
>>> plt.plot(x2, y + 0.5, 'o')
[<matplotlib.lines.Line2D object at 0x...>]
>>> plt.ylim([-0.5, 1])
(-0.5, 1)
>>> plt.show()
"""
y = linspace(start, stop, num=num, endpoint=endpoint, axis=axis)
if dtype is None:
return _nx.power(base, y)
return _nx.power(base, y).astype(dtype, copy=False)
def _geomspace_dispatcher(start, stop, num=None, endpoint=None, dtype=None,
axis=None):
return (start, stop)
@array_function_dispatch(_geomspace_dispatcher)
def geomspace(start, stop, num=50, endpoint=True, dtype=None, axis=0):
"""
Return numbers spaced evenly on a log scale (a geometric progression).
This is similar to `logspace`, but with endpoints specified directly.
Each output sample is a constant multiple of the previous.
.. versionchanged:: 1.16.0
Non-scalar `start` and `stop` are now supported.
Parameters
----------
start : array_like
The starting value of the sequence.
stop : array_like
The final value of the sequence, unless `endpoint` is False.
In that case, ``num + 1`` values are spaced over the
interval in log-space, of which all but the last (a sequence of
length `num`) are returned.
num : integer, optional
Number of samples to generate. Default is 50.
endpoint : boolean, optional
If true, `stop` is the last sample. Otherwise, it is not included.
Default is True.
dtype : dtype
The type of the output array. If `dtype` is not given, infer the data
type from the other input arguments.
axis : int, optional
The axis in the result to store the samples. Relevant only if start
or stop are array-like. By default (0), the samples will be along a
new axis inserted at the beginning. Use -1 to get an axis at the end.
.. versionadded:: 1.16.0
Returns
-------
samples : ndarray
`num` samples, equally spaced on a log scale.
See Also
--------
logspace : Similar to geomspace, but with endpoints specified using log
and base.
linspace : Similar to geomspace, but with arithmetic instead of geometric
progression.
arange : Similar to linspace, with the step size specified instead of the
number of samples.
Notes
-----
If the inputs or dtype are complex, the output will follow a logarithmic
spiral in the complex plane. (There are an infinite number of spirals
passing through two points; the output will follow the shortest such path.)
Examples
--------
>>> np.geomspace(1, 1000, num=4)
array([ 1., 10., 100., 1000.])
>>> np.geomspace(1, 1000, num=3, endpoint=False)
array([ 1., 10., 100.])
>>> np.geomspace(1, 1000, num=4, endpoint=False)
array([ 1. , 5.62341325, 31.6227766 , 177.827941 ])
>>> np.geomspace(1, 256, num=9)
array([ 1., 2., 4., 8., 16., 32., 64., 128., 256.])
Note that the above may not produce exact integers:
>>> np.geomspace(1, 256, num=9, dtype=int)
array([ 1, 2, 4, 7, 16, 32, 63, 127, 256])
>>> np.around(np.geomspace(1, 256, num=9)).astype(int)
array([ 1, 2, 4, 8, 16, 32, 64, 128, 256])
Negative, decreasing, and complex inputs are allowed:
>>> np.geomspace(1000, 1, num=4)
array([1000., 100., 10., 1.])
>>> np.geomspace(-1000, -1, num=4)
array([-1000., -100., -10., -1.])
>>> np.geomspace(1j, 1000j, num=4) # Straight line
array([0. +1.j, 0. +10.j, 0. +100.j, 0.+1000.j])
>>> np.geomspace(-1+0j, 1+0j, num=5) # Circle
array([-1.00000000e+00+1.22464680e-16j, -7.07106781e-01+7.07106781e-01j,
6.12323400e-17+1.00000000e+00j, 7.07106781e-01+7.07106781e-01j,
1.00000000e+00+0.00000000e+00j])
Graphical illustration of ``endpoint`` parameter:
>>> import matplotlib.pyplot as plt
>>> N = 10
>>> y = np.zeros(N)
>>> plt.semilogx(np.geomspace(1, 1000, N, endpoint=True), y + 1, 'o')
[<matplotlib.lines.Line2D object at 0x...>]
>>> plt.semilogx(np.geomspace(1, 1000, N, endpoint=False), y + 2, 'o')
[<matplotlib.lines.Line2D object at 0x...>]
>>> plt.axis([0.5, 2000, 0, 3])
[0.5, 2000, 0, 3]
>>> plt.grid(True, color='0.7', linestyle='-', which='both', axis='both')
>>> plt.show()
"""
start = asanyarray(start)
stop = asanyarray(stop)
if _nx.any(start == 0) or _nx.any(stop == 0):
raise ValueError('Geometric sequence cannot include zero')
dt = result_type(start, stop, float(num), _nx.zeros((), dtype))
if dtype is None:
dtype = dt
else:
# complex to dtype('complex128'), for instance
dtype = _nx.dtype(dtype)
# Promote both arguments to the same dtype in case, for instance, one is
# complex and another is negative and log would produce NaN otherwise.
# Copy since we may change things in-place further down.
start = start.astype(dt, copy=True)
stop = stop.astype(dt, copy=True)
out_sign = _nx.ones(_nx.broadcast(start, stop).shape, dt)
# Avoid negligible real or imaginary parts in output by rotating to
# positive real, calculating, then undoing rotation
if _nx.issubdtype(dt, _nx.complexfloating):
all_imag = (start.real == 0.) & (stop.real == 0.)
if _nx.any(all_imag):
start[all_imag] = start[all_imag].imag
stop[all_imag] = stop[all_imag].imag
out_sign[all_imag] = 1j
both_negative = (_nx.sign(start) == -1) & (_nx.sign(stop) == -1)
if _nx.any(both_negative):
_nx.negative(start, out=start, where=both_negative)
_nx.negative(stop, out=stop, where=both_negative)
_nx.negative(out_sign, out=out_sign, where=both_negative)
log_start = _nx.log10(start)
log_stop = _nx.log10(stop)
result = out_sign * logspace(log_start, log_stop, num=num,
endpoint=endpoint, base=10.0, dtype=dtype)
if axis != 0:
result = _nx.moveaxis(result, 0, axis)
return result.astype(dtype, copy=False)
def _needs_add_docstring(obj):
"""
Returns true if the only way to set the docstring of `obj` from python is
via add_docstring.
This function errs on the side of being overly conservative.
"""
Py_TPFLAGS_HEAPTYPE = 1 << 9
if isinstance(obj, (types.FunctionType, types.MethodType, property)):
return False
if isinstance(obj, type) and obj.__flags__ & Py_TPFLAGS_HEAPTYPE:
return False
return True
def _add_docstring(obj, doc, warn_on_python):
if warn_on_python and not _needs_add_docstring(obj):
warnings.warn(
"add_newdoc was used on a pure-python object {}. "
"Prefer to attach it directly to the source."
.format(obj),
UserWarning,
stacklevel=3)
try:
add_docstring(obj, doc)
except Exception:
pass
def add_newdoc(place, obj, doc, warn_on_python=True):
"""
Add documentation to an existing object, typically one defined in C
The purpose is to allow easier editing of the docstrings without requiring
a re-compile. This exists primarily for internal use within numpy itself.
Parameters
----------
place : str
The absolute name of the module to import from
obj : str
The name of the object to add documentation to, typically a class or
function name
doc : {str, Tuple[str, str], List[Tuple[str, str]]}
If a string, the documentation to apply to `obj`
If a tuple, then the first element is interpreted as an attribute of
`obj` and the second as the docstring to apply - ``(method, docstring)``
If a list, then each element of the list should be a tuple of length
two - ``[(method1, docstring1), (method2, docstring2), ...]``
warn_on_python : bool
If True, the default, emit `UserWarning` if this is used to attach
documentation to a pure-python object.
Notes
-----
This routine never raises an error if the docstring can't be written, but
will raise an error if the object being documented does not exist.
This routine cannot modify read-only docstrings, as appear
in new-style classes or built-in functions. Because this
routine never raises an error the caller must check manually
that the docstrings were changed.
Since this function grabs the ``char *`` from a c-level str object and puts
it into the ``tp_doc`` slot of the type of `obj`, it violates a number of
C-API best-practices, by:
- modifying a `PyTypeObject` after calling `PyType_Ready`
- calling `Py_INCREF` on the str and losing the reference, so the str
will never be released
If possible it should be avoided.
"""
new = getattr(__import__(place, globals(), {}, [obj]), obj)
if isinstance(doc, str):
_add_docstring(new, doc.strip(), warn_on_python)
elif isinstance(doc, tuple):
attr, docstring = doc
_add_docstring(getattr(new, attr), docstring.strip(), warn_on_python)
elif isinstance(doc, list):
for attr, docstring in doc:
_add_docstring(getattr(new, attr), docstring.strip(), warn_on_python)

View File

@@ -0,0 +1,254 @@
from __future__ import division, print_function
import os
import genapi
from genapi import \
TypeApi, GlobalVarApi, FunctionApi, BoolValuesApi
import numpy_api
# use annotated api when running under cpychecker
h_template = r"""
#if defined(_MULTIARRAYMODULE) || defined(WITH_CPYCHECKER_STEALS_REFERENCE_TO_ARG_ATTRIBUTE)
typedef struct {
PyObject_HEAD
npy_bool obval;
} PyBoolScalarObject;
extern NPY_NO_EXPORT PyTypeObject PyArrayMapIter_Type;
extern NPY_NO_EXPORT PyTypeObject PyArrayNeighborhoodIter_Type;
extern NPY_NO_EXPORT PyBoolScalarObject _PyArrayScalar_BoolValues[2];
%s
#else
#if defined(PY_ARRAY_UNIQUE_SYMBOL)
#define PyArray_API PY_ARRAY_UNIQUE_SYMBOL
#endif
#if defined(NO_IMPORT) || defined(NO_IMPORT_ARRAY)
extern void **PyArray_API;
#else
#if defined(PY_ARRAY_UNIQUE_SYMBOL)
void **PyArray_API;
#else
static void **PyArray_API=NULL;
#endif
#endif
%s
#if !defined(NO_IMPORT_ARRAY) && !defined(NO_IMPORT)
static int
_import_array(void)
{
int st;
PyObject *numpy = PyImport_ImportModule("numpy.core._multiarray_umath");
PyObject *c_api = NULL;
if (numpy == NULL) {
return -1;
}
c_api = PyObject_GetAttrString(numpy, "_ARRAY_API");
Py_DECREF(numpy);
if (c_api == NULL) {
PyErr_SetString(PyExc_AttributeError, "_ARRAY_API not found");
return -1;
}
#if PY_VERSION_HEX >= 0x03000000
if (!PyCapsule_CheckExact(c_api)) {
PyErr_SetString(PyExc_RuntimeError, "_ARRAY_API is not PyCapsule object");
Py_DECREF(c_api);
return -1;
}
PyArray_API = (void **)PyCapsule_GetPointer(c_api, NULL);
#else
if (!PyCObject_Check(c_api)) {
PyErr_SetString(PyExc_RuntimeError, "_ARRAY_API is not PyCObject object");
Py_DECREF(c_api);
return -1;
}
PyArray_API = (void **)PyCObject_AsVoidPtr(c_api);
#endif
Py_DECREF(c_api);
if (PyArray_API == NULL) {
PyErr_SetString(PyExc_RuntimeError, "_ARRAY_API is NULL pointer");
return -1;
}
/* Perform runtime check of C API version */
if (NPY_VERSION != PyArray_GetNDArrayCVersion()) {
PyErr_Format(PyExc_RuntimeError, "module compiled against "\
"ABI version 0x%%x but this version of numpy is 0x%%x", \
(int) NPY_VERSION, (int) PyArray_GetNDArrayCVersion());
return -1;
}
if (NPY_FEATURE_VERSION > PyArray_GetNDArrayCFeatureVersion()) {
PyErr_Format(PyExc_RuntimeError, "module compiled against "\
"API version 0x%%x but this version of numpy is 0x%%x", \
(int) NPY_FEATURE_VERSION, (int) PyArray_GetNDArrayCFeatureVersion());
return -1;
}
/*
* Perform runtime check of endianness and check it matches the one set by
* the headers (npy_endian.h) as a safeguard
*/
st = PyArray_GetEndianness();
if (st == NPY_CPU_UNKNOWN_ENDIAN) {
PyErr_Format(PyExc_RuntimeError, "FATAL: module compiled as unknown endian");
return -1;
}
#if NPY_BYTE_ORDER == NPY_BIG_ENDIAN
if (st != NPY_CPU_BIG) {
PyErr_Format(PyExc_RuntimeError, "FATAL: module compiled as "\
"big endian, but detected different endianness at runtime");
return -1;
}
#elif NPY_BYTE_ORDER == NPY_LITTLE_ENDIAN
if (st != NPY_CPU_LITTLE) {
PyErr_Format(PyExc_RuntimeError, "FATAL: module compiled as "\
"little endian, but detected different endianness at runtime");
return -1;
}
#endif
return 0;
}
#if PY_VERSION_HEX >= 0x03000000
#define NUMPY_IMPORT_ARRAY_RETVAL NULL
#else
#define NUMPY_IMPORT_ARRAY_RETVAL
#endif
#define import_array() {if (_import_array() < 0) {PyErr_Print(); PyErr_SetString(PyExc_ImportError, "numpy.core.multiarray failed to import"); return NUMPY_IMPORT_ARRAY_RETVAL; } }
#define import_array1(ret) {if (_import_array() < 0) {PyErr_Print(); PyErr_SetString(PyExc_ImportError, "numpy.core.multiarray failed to import"); return ret; } }
#define import_array2(msg, ret) {if (_import_array() < 0) {PyErr_Print(); PyErr_SetString(PyExc_ImportError, msg); return ret; } }
#endif
#endif
"""
c_template = r"""
/* These pointers will be stored in the C-object for use in other
extension modules
*/
void *PyArray_API[] = {
%s
};
"""
c_api_header = """
===========
NumPy C-API
===========
"""
def generate_api(output_dir, force=False):
basename = 'multiarray_api'
h_file = os.path.join(output_dir, '__%s.h' % basename)
c_file = os.path.join(output_dir, '__%s.c' % basename)
d_file = os.path.join(output_dir, '%s.txt' % basename)
targets = (h_file, c_file, d_file)
sources = numpy_api.multiarray_api
if (not force and not genapi.should_rebuild(targets, [numpy_api.__file__, __file__])):
return targets
else:
do_generate_api(targets, sources)
return targets
def do_generate_api(targets, sources):
header_file = targets[0]
c_file = targets[1]
doc_file = targets[2]
global_vars = sources[0]
scalar_bool_values = sources[1]
types_api = sources[2]
multiarray_funcs = sources[3]
multiarray_api = sources[:]
module_list = []
extension_list = []
init_list = []
# Check multiarray api indexes
multiarray_api_index = genapi.merge_api_dicts(multiarray_api)
genapi.check_api_dict(multiarray_api_index)
numpyapi_list = genapi.get_api_functions('NUMPY_API',
multiarray_funcs)
# FIXME: ordered_funcs_api is unused
ordered_funcs_api = genapi.order_dict(multiarray_funcs)
# Create dict name -> *Api instance
api_name = 'PyArray_API'
multiarray_api_dict = {}
for f in numpyapi_list:
name = f.name
index = multiarray_funcs[name][0]
annotations = multiarray_funcs[name][1:]
multiarray_api_dict[f.name] = FunctionApi(f.name, index, annotations,
f.return_type,
f.args, api_name)
for name, val in global_vars.items():
index, type = val
multiarray_api_dict[name] = GlobalVarApi(name, index, type, api_name)
for name, val in scalar_bool_values.items():
index = val[0]
multiarray_api_dict[name] = BoolValuesApi(name, index, api_name)
for name, val in types_api.items():
index = val[0]
multiarray_api_dict[name] = TypeApi(name, index, 'PyTypeObject', api_name)
if len(multiarray_api_dict) != len(multiarray_api_index):
keys_dict = set(multiarray_api_dict.keys())
keys_index = set(multiarray_api_index.keys())
raise AssertionError(
"Multiarray API size mismatch - "
"index has extra keys {}, dict has extra keys {}"
.format(keys_index - keys_dict, keys_dict - keys_index)
)
extension_list = []
for name, index in genapi.order_dict(multiarray_api_index):
api_item = multiarray_api_dict[name]
extension_list.append(api_item.define_from_array_api_string())
init_list.append(api_item.array_api_define())
module_list.append(api_item.internal_define())
# Write to header
s = h_template % ('\n'.join(module_list), '\n'.join(extension_list))
genapi.write_file(header_file, s)
# Write to c-code
s = c_template % ',\n'.join(init_list)
genapi.write_file(c_file, s)
# write to documentation
s = c_api_header
for func in numpyapi_list:
s += func.to_ReST()
s += '\n\n'
genapi.write_file(doc_file, s)
return targets

View File

@@ -0,0 +1,548 @@
"""Machine limits for Float32 and Float64 and (long double) if available...
"""
from __future__ import division, absolute_import, print_function
__all__ = ['finfo', 'iinfo']
import warnings
from .machar import MachAr
from .overrides import set_module
from . import numeric
from . import numerictypes as ntypes
from .numeric import array, inf
from .umath import log10, exp2
from . import umath
def _fr0(a):
"""fix rank-0 --> rank-1"""
if a.ndim == 0:
a = a.copy()
a.shape = (1,)
return a
def _fr1(a):
"""fix rank > 0 --> rank-0"""
if a.size == 1:
a = a.copy()
a.shape = ()
return a
class MachArLike(object):
""" Object to simulate MachAr instance """
def __init__(self,
ftype,
**kwargs):
params = _MACHAR_PARAMS[ftype]
float_conv = lambda v: array([v], ftype)
float_to_float = lambda v : _fr1(float_conv(v))
float_to_str = lambda v: (params['fmt'] % array(_fr0(v)[0], ftype))
self.title = params['title']
# Parameter types same as for discovered MachAr object.
self.epsilon = self.eps = float_to_float(kwargs.pop('eps'))
self.epsneg = float_to_float(kwargs.pop('epsneg'))
self.xmax = self.huge = float_to_float(kwargs.pop('huge'))
self.xmin = self.tiny = float_to_float(kwargs.pop('tiny'))
self.ibeta = params['itype'](kwargs.pop('ibeta'))
self.__dict__.update(kwargs)
self.precision = int(-log10(self.eps))
self.resolution = float_to_float(float_conv(10) ** (-self.precision))
self._str_eps = float_to_str(self.eps)
self._str_epsneg = float_to_str(self.epsneg)
self._str_xmin = float_to_str(self.xmin)
self._str_xmax = float_to_str(self.xmax)
self._str_resolution = float_to_str(self.resolution)
_convert_to_float = {
ntypes.csingle: ntypes.single,
ntypes.complex_: ntypes.float_,
ntypes.clongfloat: ntypes.longfloat
}
# Parameters for creating MachAr / MachAr-like objects
_title_fmt = 'numpy {} precision floating point number'
_MACHAR_PARAMS = {
ntypes.double: dict(
itype = ntypes.int64,
fmt = '%24.16e',
title = _title_fmt.format('double')),
ntypes.single: dict(
itype = ntypes.int32,
fmt = '%15.7e',
title = _title_fmt.format('single')),
ntypes.longdouble: dict(
itype = ntypes.longlong,
fmt = '%s',
title = _title_fmt.format('long double')),
ntypes.half: dict(
itype = ntypes.int16,
fmt = '%12.5e',
title = _title_fmt.format('half'))}
# Key to identify the floating point type. Key is result of
# ftype('-0.1').newbyteorder('<').tobytes()
# See:
# https://perl5.git.perl.org/perl.git/blob/3118d7d684b56cbeb702af874f4326683c45f045:/Configure
_KNOWN_TYPES = {}
def _register_type(machar, bytepat):
_KNOWN_TYPES[bytepat] = machar
_float_ma = {}
def _register_known_types():
# Known parameters for float16
# See docstring of MachAr class for description of parameters.
f16 = ntypes.float16
float16_ma = MachArLike(f16,
machep=-10,
negep=-11,
minexp=-14,
maxexp=16,
it=10,
iexp=5,
ibeta=2,
irnd=5,
ngrd=0,
eps=exp2(f16(-10)),
epsneg=exp2(f16(-11)),
huge=f16(65504),
tiny=f16(2 ** -14))
_register_type(float16_ma, b'f\xae')
_float_ma[16] = float16_ma
# Known parameters for float32
f32 = ntypes.float32
float32_ma = MachArLike(f32,
machep=-23,
negep=-24,
minexp=-126,
maxexp=128,
it=23,
iexp=8,
ibeta=2,
irnd=5,
ngrd=0,
eps=exp2(f32(-23)),
epsneg=exp2(f32(-24)),
huge=f32((1 - 2 ** -24) * 2**128),
tiny=exp2(f32(-126)))
_register_type(float32_ma, b'\xcd\xcc\xcc\xbd')
_float_ma[32] = float32_ma
# Known parameters for float64
f64 = ntypes.float64
epsneg_f64 = 2.0 ** -53.0
tiny_f64 = 2.0 ** -1022.0
float64_ma = MachArLike(f64,
machep=-52,
negep=-53,
minexp=-1022,
maxexp=1024,
it=52,
iexp=11,
ibeta=2,
irnd=5,
ngrd=0,
eps=2.0 ** -52.0,
epsneg=epsneg_f64,
huge=(1.0 - epsneg_f64) / tiny_f64 * f64(4),
tiny=tiny_f64)
_register_type(float64_ma, b'\x9a\x99\x99\x99\x99\x99\xb9\xbf')
_float_ma[64] = float64_ma
# Known parameters for IEEE 754 128-bit binary float
ld = ntypes.longdouble
epsneg_f128 = exp2(ld(-113))
tiny_f128 = exp2(ld(-16382))
# Ignore runtime error when this is not f128
with numeric.errstate(all='ignore'):
huge_f128 = (ld(1) - epsneg_f128) / tiny_f128 * ld(4)
float128_ma = MachArLike(ld,
machep=-112,
negep=-113,
minexp=-16382,
maxexp=16384,
it=112,
iexp=15,
ibeta=2,
irnd=5,
ngrd=0,
eps=exp2(ld(-112)),
epsneg=epsneg_f128,
huge=huge_f128,
tiny=tiny_f128)
# IEEE 754 128-bit binary float
_register_type(float128_ma,
b'\x9a\x99\x99\x99\x99\x99\x99\x99\x99\x99\x99\x99\x99\x99\xfb\xbf')
_register_type(float128_ma,
b'\x9a\x99\x99\x99\x99\x99\x99\x99\x99\x99\x99\x99\x99\x99\xfb\xbf')
_float_ma[128] = float128_ma
# Known parameters for float80 (Intel 80-bit extended precision)
epsneg_f80 = exp2(ld(-64))
tiny_f80 = exp2(ld(-16382))
# Ignore runtime error when this is not f80
with numeric.errstate(all='ignore'):
huge_f80 = (ld(1) - epsneg_f80) / tiny_f80 * ld(4)
float80_ma = MachArLike(ld,
machep=-63,
negep=-64,
minexp=-16382,
maxexp=16384,
it=63,
iexp=15,
ibeta=2,
irnd=5,
ngrd=0,
eps=exp2(ld(-63)),
epsneg=epsneg_f80,
huge=huge_f80,
tiny=tiny_f80)
# float80, first 10 bytes containing actual storage
_register_type(float80_ma, b'\xcd\xcc\xcc\xcc\xcc\xcc\xcc\xcc\xfb\xbf')
_float_ma[80] = float80_ma
# Guessed / known parameters for double double; see:
# https://en.wikipedia.org/wiki/Quadruple-precision_floating-point_format#Double-double_arithmetic
# These numbers have the same exponent range as float64, but extended number of
# digits in the significand.
huge_dd = (umath.nextafter(ld(inf), ld(0))
if hasattr(umath, 'nextafter') # Missing on some platforms?
else float64_ma.huge)
float_dd_ma = MachArLike(ld,
machep=-105,
negep=-106,
minexp=-1022,
maxexp=1024,
it=105,
iexp=11,
ibeta=2,
irnd=5,
ngrd=0,
eps=exp2(ld(-105)),
epsneg= exp2(ld(-106)),
huge=huge_dd,
tiny=exp2(ld(-1022)))
# double double; low, high order (e.g. PPC 64)
_register_type(float_dd_ma,
b'\x9a\x99\x99\x99\x99\x99Y<\x9a\x99\x99\x99\x99\x99\xb9\xbf')
# double double; high, low order (e.g. PPC 64 le)
_register_type(float_dd_ma,
b'\x9a\x99\x99\x99\x99\x99\xb9\xbf\x9a\x99\x99\x99\x99\x99Y<')
_float_ma['dd'] = float_dd_ma
def _get_machar(ftype):
""" Get MachAr instance or MachAr-like instance
Get parameters for floating point type, by first trying signatures of
various known floating point types, then, if none match, attempting to
identify parameters by analysis.
Parameters
----------
ftype : class
Numpy floating point type class (e.g. ``np.float64``)
Returns
-------
ma_like : instance of :class:`MachAr` or :class:`MachArLike`
Object giving floating point parameters for `ftype`.
Warns
-----
UserWarning
If the binary signature of the float type is not in the dictionary of
known float types.
"""
params = _MACHAR_PARAMS.get(ftype)
if params is None:
raise ValueError(repr(ftype))
# Detect known / suspected types
key = ftype('-0.1').newbyteorder('<').tobytes()
ma_like = _KNOWN_TYPES.get(key)
# Could be 80 bit == 10 byte extended precision, where last bytes can be
# random garbage. Try comparing first 10 bytes to pattern.
if ma_like is None and ftype == ntypes.longdouble:
ma_like = _KNOWN_TYPES.get(key[:10])
if ma_like is not None:
return ma_like
# Fall back to parameter discovery
warnings.warn(
'Signature {} for {} does not match any known type: '
'falling back to type probe function'.format(key, ftype),
UserWarning, stacklevel=2)
return _discovered_machar(ftype)
def _discovered_machar(ftype):
""" Create MachAr instance with found information on float types
"""
params = _MACHAR_PARAMS[ftype]
return MachAr(lambda v: array([v], ftype),
lambda v:_fr0(v.astype(params['itype']))[0],
lambda v:array(_fr0(v)[0], ftype),
lambda v: params['fmt'] % array(_fr0(v)[0], ftype),
params['title'])
@set_module('numpy')
class finfo(object):
"""
finfo(dtype)
Machine limits for floating point types.
Attributes
----------
bits : int
The number of bits occupied by the type.
eps : float
The smallest representable positive number such that
``1.0 + eps != 1.0``. Type of `eps` is an appropriate floating
point type.
epsneg : floating point number of the appropriate type
The smallest representable positive number such that
``1.0 - epsneg != 1.0``.
iexp : int
The number of bits in the exponent portion of the floating point
representation.
machar : MachAr
The object which calculated these parameters and holds more
detailed information.
machep : int
The exponent that yields `eps`.
max : floating point number of the appropriate type
The largest representable number.
maxexp : int
The smallest positive power of the base (2) that causes overflow.
min : floating point number of the appropriate type
The smallest representable number, typically ``-max``.
minexp : int
The most negative power of the base (2) consistent with there
being no leading 0's in the mantissa.
negep : int
The exponent that yields `epsneg`.
nexp : int
The number of bits in the exponent including its sign and bias.
nmant : int
The number of bits in the mantissa.
precision : int
The approximate number of decimal digits to which this kind of
float is precise.
resolution : floating point number of the appropriate type
The approximate decimal resolution of this type, i.e.,
``10**-precision``.
tiny : float
The smallest positive usable number. Type of `tiny` is an
appropriate floating point type.
Parameters
----------
dtype : float, dtype, or instance
Kind of floating point data-type about which to get information.
See Also
--------
MachAr : The implementation of the tests that produce this information.
iinfo : The equivalent for integer data types.
Notes
-----
For developers of NumPy: do not instantiate this at the module level.
The initial calculation of these parameters is expensive and negatively
impacts import times. These objects are cached, so calling ``finfo()``
repeatedly inside your functions is not a problem.
"""
_finfo_cache = {}
def __new__(cls, dtype):
try:
dtype = numeric.dtype(dtype)
except TypeError:
# In case a float instance was given
dtype = numeric.dtype(type(dtype))
obj = cls._finfo_cache.get(dtype, None)
if obj is not None:
return obj
dtypes = [dtype]
newdtype = numeric.obj2sctype(dtype)
if newdtype is not dtype:
dtypes.append(newdtype)
dtype = newdtype
if not issubclass(dtype, numeric.inexact):
raise ValueError("data type %r not inexact" % (dtype))
obj = cls._finfo_cache.get(dtype, None)
if obj is not None:
return obj
if not issubclass(dtype, numeric.floating):
newdtype = _convert_to_float[dtype]
if newdtype is not dtype:
dtypes.append(newdtype)
dtype = newdtype
obj = cls._finfo_cache.get(dtype, None)
if obj is not None:
return obj
obj = object.__new__(cls)._init(dtype)
for dt in dtypes:
cls._finfo_cache[dt] = obj
return obj
def _init(self, dtype):
self.dtype = numeric.dtype(dtype)
machar = _get_machar(dtype)
for word in ['precision', 'iexp',
'maxexp', 'minexp', 'negep',
'machep']:
setattr(self, word, getattr(machar, word))
for word in ['tiny', 'resolution', 'epsneg']:
setattr(self, word, getattr(machar, word).flat[0])
self.bits = self.dtype.itemsize * 8
self.max = machar.huge.flat[0]
self.min = -self.max
self.eps = machar.eps.flat[0]
self.nexp = machar.iexp
self.nmant = machar.it
self.machar = machar
self._str_tiny = machar._str_xmin.strip()
self._str_max = machar._str_xmax.strip()
self._str_epsneg = machar._str_epsneg.strip()
self._str_eps = machar._str_eps.strip()
self._str_resolution = machar._str_resolution.strip()
return self
def __str__(self):
fmt = (
'Machine parameters for %(dtype)s\n'
'---------------------------------------------------------------\n'
'precision = %(precision)3s resolution = %(_str_resolution)s\n'
'machep = %(machep)6s eps = %(_str_eps)s\n'
'negep = %(negep)6s epsneg = %(_str_epsneg)s\n'
'minexp = %(minexp)6s tiny = %(_str_tiny)s\n'
'maxexp = %(maxexp)6s max = %(_str_max)s\n'
'nexp = %(nexp)6s min = -max\n'
'---------------------------------------------------------------\n'
)
return fmt % self.__dict__
def __repr__(self):
c = self.__class__.__name__
d = self.__dict__.copy()
d['klass'] = c
return (("%(klass)s(resolution=%(resolution)s, min=-%(_str_max)s,"
" max=%(_str_max)s, dtype=%(dtype)s)") % d)
@set_module('numpy')
class iinfo(object):
"""
iinfo(type)
Machine limits for integer types.
Attributes
----------
bits : int
The number of bits occupied by the type.
min : int
The smallest integer expressible by the type.
max : int
The largest integer expressible by the type.
Parameters
----------
int_type : integer type, dtype, or instance
The kind of integer data type to get information about.
See Also
--------
finfo : The equivalent for floating point data types.
Examples
--------
With types:
>>> ii16 = np.iinfo(np.int16)
>>> ii16.min
-32768
>>> ii16.max
32767
>>> ii32 = np.iinfo(np.int32)
>>> ii32.min
-2147483648
>>> ii32.max
2147483647
With instances:
>>> ii32 = np.iinfo(np.int32(10))
>>> ii32.min
-2147483648
>>> ii32.max
2147483647
"""
_min_vals = {}
_max_vals = {}
def __init__(self, int_type):
try:
self.dtype = numeric.dtype(int_type)
except TypeError:
self.dtype = numeric.dtype(type(int_type))
self.kind = self.dtype.kind
self.bits = self.dtype.itemsize * 8
self.key = "%s%d" % (self.kind, self.bits)
if self.kind not in 'iu':
raise ValueError("Invalid integer data type %r." % (self.kind,))
@property
def min(self):
"""Minimum value of given dtype."""
if self.kind == 'u':
return 0
else:
try:
val = iinfo._min_vals[self.key]
except KeyError:
val = int(-(1 << (self.bits-1)))
iinfo._min_vals[self.key] = val
return val
@property
def max(self):
"""Maximum value of given dtype."""
try:
val = iinfo._max_vals[self.key]
except KeyError:
if self.kind == 'u':
val = int((1 << self.bits) - 1)
else:
val = int((1 << (self.bits-1)) - 1)
iinfo._max_vals[self.key] = val
return val
def __str__(self):
"""String representation."""
fmt = (
'Machine parameters for %(dtype)s\n'
'---------------------------------------------------------------\n'
'min = %(min)s\n'
'max = %(max)s\n'
'---------------------------------------------------------------\n'
)
return fmt % {'dtype': self.dtype, 'min': self.min, 'max': self.max}
def __repr__(self):
return "%s(min=%s, max=%s, dtype=%s)" % (self.__class__.__name__,
self.min, self.max, self.dtype)

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