bradybod-usu/cs5500_parallel_prog
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7
FinalProject/CMakeLists.txt
View File

@@ -3,16 +3,15 @@ project(FinalProject)
set(CMAKE_CXX_STANDARD 11)
SET(CMAKE_CXX_COMPILER mpicxx)
find_package(MPI REQUIRED)
find_package(nlohmann_json 3.2.0 REQUIRED)
add_definitions(-DOMPI_SKIP_MPICXX)
set(HEADER_FILES
)
set(SOURCE_FILES
Serialize_Deserialize_Vector.h)
set(SOURCE_FILES
)
add_executable(HW10 ${HEADER_FILES} ${SOURCE_FILES} main.cpp)
set_property(TARGET HW10 PROPERTY CXX_STANDARD 11)
target_compile_options(HW10 PRIVATE -Wall -Wextra -pedantic -Wl,--stack,10000000 -O3)
target_link_libraries(HW10 PRIVATE MPI::MPI_C nlohmann_json::nlohmann_json)
target_link_libraries(HW10 PRIVATE MPI::MPI_C)

11
FinalProject/Matrix.txt
View File

@@ -1,8 +1,9 @@
3
1 2 3
4 5 6
7 8 9
4
0 3 2 1
3 2 2 2
1 4 1 5
2 6 7 2
9 8 7
6 5 4
3 2 1
3 2 1

BIN
FinalProject/a.out
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Binary file not shown.

14
FinalProject/cmake-build-debug/CMakeFiles/HW10.dir/CXX.includecache
View File

@@ -6,6 +6,14 @@
#IncludeRegexTransform:
/Users/bradybodily/Repositories/CS5500_Parallel_Programming/FinalProject/Serialize_Deserialize_Vector.h
vector
-
iostream
-
math.h
-
/Users/bradybodily/Repositories/CS5500_Parallel_Programming/FinalProject/main.cpp
fstream
-
@@ -13,12 +21,10 @@ iostream
-
mpi.h
-
stdlib.h
-
time.h
-
vector
-
Serialize_Deserialize_Vector.h
/Users/bradybodily/Repositories/CS5500_Parallel_Programming/FinalProject/Serialize_Deserialize_Vector.h
/usr/local/Cellar/open-mpi/4.0.2/include/mpi.h
stddef.h

1
FinalProject/cmake-build-debug/CMakeFiles/HW10.dir/DependInfo.cmake
View File

@@ -16,7 +16,6 @@ set(CMAKE_TARGET_DEFINITIONS_CXX
# The include file search paths:
set(CMAKE_CXX_TARGET_INCLUDE_PATH
"/usr/local/Cellar/open-mpi/4.0.2/include"
"/usr/local/include"
)
# Targets to which this target links.

1
FinalProject/cmake-build-debug/CMakeFiles/HW10.dir/depend.internal
View File

@@ -2,6 +2,7 @@
# Generated by "Unix Makefiles" Generator, CMake Version 3.15
CMakeFiles/HW10.dir/main.cpp.o
/Users/bradybodily/Repositories/CS5500_Parallel_Programming/FinalProject/Serialize_Deserialize_Vector.h
/Users/bradybodily/Repositories/CS5500_Parallel_Programming/FinalProject/main.cpp
/usr/local/Cellar/open-mpi/4.0.2/include/mpi.h
/usr/local/Cellar/open-mpi/4.0.2/include/mpi_portable_platform.h

1
FinalProject/cmake-build-debug/CMakeFiles/HW10.dir/depend.make
View File

@@ -1,6 +1,7 @@
# CMAKE generated file: DO NOT EDIT!
# Generated by "Unix Makefiles" Generator, CMake Version 3.15
CMakeFiles/HW10.dir/main.cpp.o: ../Serialize_Deserialize_Vector.h
CMakeFiles/HW10.dir/main.cpp.o: ../main.cpp
CMakeFiles/HW10.dir/main.cpp.o: /usr/local/Cellar/open-mpi/4.0.2/include/mpi.h
CMakeFiles/HW10.dir/main.cpp.o: /usr/local/Cellar/open-mpi/4.0.2/include/mpi_portable_platform.h

2
FinalProject/cmake-build-debug/CMakeFiles/HW10.dir/flags.make
View File

@@ -6,5 +6,5 @@ CXX_FLAGS = -g -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX10.15.sd
CXX_DEFINES = -DOMPI_SKIP_MPICXX
CXX_INCLUDES = -isystem /usr/local/Cellar/open-mpi/4.0.2/include -isystem /usr/local/include
CXX_INCLUDES = -isystem /usr/local/Cellar/open-mpi/4.0.2/include

BIN
FinalProject/cmake-build-debug/CMakeFiles/HW10.dir/main.cpp.o
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Binary file not shown.

3
FinalProject/cmake-build-debug/CMakeFiles/Makefile.cmake
View File

@@ -42,9 +42,6 @@ set(CMAKE_MAKEFILE_DEPENDS
"CMakeFiles/3.15.3/CMakeCXXCompiler.cmake"
"CMakeFiles/3.15.3/CMakeSystem.cmake"
"CMakeFiles/FindMPI/test_mpi.cpp"
"/usr/local/lib/cmake/nlohmann_json/nlohmann_jsonConfig.cmake"
"/usr/local/lib/cmake/nlohmann_json/nlohmann_jsonConfigVersion.cmake"
"/usr/local/lib/cmake/nlohmann_json/nlohmann_jsonTargets.cmake"
)
# The corresponding makefile is:

15
FinalProject/cmake-build-debug/FinalProject.cbp
View File

@@ -5,7 +5,7 @@
<Option title="FinalProject"/>
<Option makefile_is_custom="1"/>
<Option compiler="gcc"/>
<Option virtualFolders="CMake Files\;CMake Files\..\;CMake Files\..\..\;CMake Files\..\..\..\;CMake Files\..\..\..\..\;CMake Files\..\..\..\..\..\;CMake Files\..\..\..\..\..\usr\;CMake Files\..\..\..\..\..\usr\local\;CMake Files\..\..\..\..\..\usr\local\lib\;CMake Files\..\..\..\..\..\usr\local\lib\cmake\;CMake Files\..\..\..\..\..\usr\local\lib\cmake\nlohmann_json\;"/>
<Option virtualFolders="CMake Files\;"/>
<Build>
<Target title="all">
<Option working_dir="/Users/bradybodily/Repositories/CS5500_Parallel_Programming/FinalProject/cmake-build-debug"/>
@@ -46,8 +46,8 @@
<Compiler>
<Add option="-DOMPI_SKIP_MPICXX"/>
<Add directory="/usr/local/Cellar/open-mpi/4.0.2/include"/>
<Add directory="/usr/local/include"/>
<Add directory="/Library/Developer/CommandLineTools/usr/bin/../include/c++/v1"/>
<Add directory="/usr/local/include"/>
<Add directory="/Library/Developer/CommandLineTools/usr/lib/clang/11.0.0/include"/>
<Add directory="/Library/Developer/CommandLineTools/usr/include"/>
<Add directory="/System/Library/Frameworks"/>
@@ -69,8 +69,8 @@
<Compiler>
<Add option="-DOMPI_SKIP_MPICXX"/>
<Add directory="/usr/local/Cellar/open-mpi/4.0.2/include"/>
<Add directory="/usr/local/include"/>
<Add directory="/Library/Developer/CommandLineTools/usr/bin/../include/c++/v1"/>
<Add directory="/usr/local/include"/>
<Add directory="/Library/Developer/CommandLineTools/usr/lib/clang/11.0.0/include"/>
<Add directory="/Library/Developer/CommandLineTools/usr/include"/>
<Add directory="/System/Library/Frameworks"/>
@@ -93,14 +93,5 @@
<Unit filename="/Users/bradybodily/Repositories/CS5500_Parallel_Programming/FinalProject/CMakeLists.txt">
<Option virtualFolder="CMake Files\"/>
</Unit>
<Unit filename="/Users/bradybodily/Repositories/CS5500_Parallel_Programming/FinalProject/../../../../../usr/local/lib/cmake/nlohmann_json/nlohmann_jsonConfig.cmake">
<Option virtualFolder="CMake Files\..\..\..\..\..\usr\local\lib\cmake\nlohmann_json\"/>
</Unit>
<Unit filename="/Users/bradybodily/Repositories/CS5500_Parallel_Programming/FinalProject/../../../../../usr/local/lib/cmake/nlohmann_json/nlohmann_jsonConfigVersion.cmake">
<Option virtualFolder="CMake Files\..\..\..\..\..\usr\local\lib\cmake\nlohmann_json\"/>
</Unit>
<Unit filename="/Users/bradybodily/Repositories/CS5500_Parallel_Programming/FinalProject/../../../../../usr/local/lib/cmake/nlohmann_json/nlohmann_jsonTargets.cmake">
<Option virtualFolder="CMake Files\..\..\..\..\..\usr\local\lib\cmake\nlohmann_json\"/>
</Unit>
</Project>
</CodeBlocks_project_file>

BIN
FinalProject/cmake-build-debug/HW10
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229
FinalProject/main.cpp
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@@ -7,11 +7,9 @@
#define MCW MPI_COMM_WORLD
using namespace std;
using sdv = Serialize_Deserialize_Vector;
//Problem size
int N;
//global variables
ofstream myfile;
std::vector<std::vector<double> > A = std::vector<std::vector<double> >(0, std::vector<double>(0));
std::vector<std::vector<double> > B = std::vector<std::vector<double> >(0, std::vector<double>(0));
std::vector<std::vector<double> > AB = std::vector<std::vector<double> >(0, std::vector<double>(0));
@@ -23,18 +21,132 @@ void serial_version();
void compute_interval(int start, int interval);
void multiplyMatrix(int rank, int size);
void read_in_matrices();
void print_help();
void determinant();
std::vector<std::vector<double> > read_in_single_matrix();
void reduced_row();
int main(int argc, char** argv){
int main(int argc, char** argv) {
int rank, size;
MPI_Init(&argc, &argv);
MPI_Comm_rank(MCW, &rank);
MPI_Comm_size(MCW, &size);
multiplyMatrix(rank, size);
if(!rank)
myfile.open ("results.txt");
bool done = false;
while (!done) {
char user_input;
if (!rank) {
bool user_input_complete = false;
while (!user_input_complete) {
cout << "Enter your selection: \n\t 1=Matrix Multiplication \n\t 2=Reduced Row \n\t 3=Matrix Determinent \n\t h=help \n\t q=Exit"
<< endl;
cin >> user_input;
if (user_input == 'h')
print_help();
else if (user_input == '1' || user_input == '2' || user_input == '3' ||
user_input == 'q')
user_input_complete = true;
}
}
MPI_Barrier(MCW);
MPI_Bcast(&user_input, 1, MPI_INT, 0, MCW );
if (user_input == '1')
multiplyMatrix(rank, size);
else if (user_input == '2'){
if(!rank)
reduced_row();
}
else if (user_input == '3') {
if (!rank)
determinant();
}
else if (user_input == 'q')
done = true;
}
myfile.close();
MPI_Finalize();
return 0;
}
void reduced_row() {
cout << "Reduced Row: " << endl;
myfile << "Reduced Row: " << endl;
std::vector<std::vector<double> > M = read_in_single_matrix();
int n = M.size();
const double SMALL = 1.0E-30;
for (int i = 0; i < n - 1; i++) {
int r = i;
double maxM = abs(M[i][i]);
for (int k = i + 1; k < n; k++) {
double val = abs(M[k][i]);
if (val > maxM) {
r = k;
maxM = val;
}
}
if (r != i)
for (int j = i; j < n; j++)
swap(M[i][j], M[r][j]);
double pivot = M[i][i];
if (abs(pivot) < SMALL) {
print_matrix(M);
return;
}
for (int rows = i + 1; rows < n; rows++) {
double multiple = M[rows][i] / pivot;
for (int j = i; j < n; j++)
M[rows][j] -= multiple * M[i][j];
}
}
print_matrix(M);
}
std::vector<std::vector<double> > read_in_single_matrix() {
ifstream f("Matrix.txt");
f >> N;
// Allocate memory
A.resize(N);
for (int i = 0; i < N; ++i)
A[i].resize(N);
for (int i = 0; i < N; i++)
for (int j = 0; j < N; j++)
f >> A[i][j];
return A;
}
void print_help(){
cout << "Inputs-"
"\n\t<1> Matrix Multiplication"
"\n\t\t Matrix Multiplication runs both a parallel and serial implementation timing both results for comparison."
"\n\t\t The read files first line should be the dimensions of the matricies being read and formatted as below:"
"\n\t\t\t 3"
"\n\t\t\t 1 2 3"
"\n\t\t\t 4 5 6"
"\n\t\t\t 7 8 9"
"\n"
"\n\t\t\t 9 8 7"
"\n\t\t\t 6 5 4"
"\n\t\t\t 3 2 1"
"\n\n\t<2> Reduced Row"
"\n\t\t Reduced row will preform row swaps to get the matrix into reduced row format."
"\n\t\t The read files first line should be the dimensions of the matrix being read and formatted as below:"
"\n\t\t\t 3"
"\n\t\t\t 1 2 3"
"\n\t\t\t 4 5 6"
"\n\t\t\t 7 8 9"
"\n\n\t<3> Matrix Determinent"
"\n\t\t The Matrix determinant will be calculated by placing the matrix in reduced row format and then multiplying the pivot points."
"\n\t\t The read files first line should be the dimensions of the matrix being read and formatted as below:"
"\n\t\t\t 3"
"\n\t\t\t 1 2 3"
"\n\t\t\t 4 5 6"
"\n\t\t\t 7 8 9"
<<endl << endl;
}
void read_in_matrices() {
ifstream f("Matrix.txt");
f >> N;
@@ -51,8 +163,6 @@ void read_in_matrices() {
AB_serial.resize(N);
for (int i = 0; i < N; ++i)
AB_serial[i].resize(N);
// Fill Matricies
for (int i = 0; i < N; i++)
for (int j = 0; j < N; j++)
@@ -64,18 +174,18 @@ void read_in_matrices() {
for (int j = 0; j < N; j++)
AB[i][j] = 0;
}
//Function to print matrix
void print_matrix(std::vector<std::vector<double> >mat) {
for (int i = 0; i < N; i++){
for (int j = 0; j<N; j++){
cout << mat[i][j] << " ";
myfile << mat[i][j] << " ";
}
cout << endl;
myfile << endl;
}
myfile << endl;
cout << endl;
}
// Serial multiplication works.
void serial_version(){
for (int i = 0; i <N; i++){
for (int j = 0; j < N;j++){
@@ -86,7 +196,6 @@ void serial_version(){
}
}
}
//Compute interval multiplication
void compute_interval(int start,int interval){
for(int i = start; i <start+interval;i++){
for (int j = 0; j <N; j++){
@@ -98,12 +207,7 @@ void compute_interval(int start,int interval){
}
}
void multiplyMatrix(int rank, int size){
//timing variables
double time1,time2,time3;
//compute interval size
//rank 0 responsible for remainder
//Rank 0 fills the matrices and computes the remainder
if(!rank){
read_in_matrices();
}
@@ -119,82 +223,107 @@ void multiplyMatrix(int rank, int size){
for (int i = 0; i < N; ++i)
AB[i].resize(N);
}
// Record start time
MPI_Barrier(MCW);
time1 = MPI_Wtime();
int interval = N / size;
int remainder = N % size;
MPI_Bcast(&interval, 1, MPI_INT, 0, MCW);
MPI_Bcast(&remainder, 1, MPI_INT, 0, MCW);
// Record start time
MPI_Barrier(MCW);
time1 = MPI_Wtime();
if (!rank) {
compute_interval(size * interval, remainder);
}
//Broadcast Matrix B and scatter relevant portions of Matrix A
std::vector<double> tmpB = std::vector<double>(N*N);
tmpB = Serialize_Deserialize_Vector::Serialize(B);
MPI_Bcast(&tmpB[0],N*N,MPI_DOUBLE,0,MCW);
if(rank)
B=Serialize_Deserialize_Vector::Deserialize(tmpB);
//print_matrix(B);
std::vector<double> tmpA = std::vector<double>(N*N);
tmpA = Serialize_Deserialize_Vector::Serialize(A);
MPI_Bcast(&tmpA[0], N*N, MPI_DOUBLE, 0, MCW);
// MPI_Scatter(&tmpA[0], interval * N, MPI_DOUBLE, &tmpA[rank * interval], interval * N,
// MPI_DOUBLE, 0, MCW);
if(rank)
A=Serialize_Deserialize_Vector::Deserialize(tmpA);
//print_matrix(A);
//Each processor cumputes the interval they are responsible for
compute_interval(rank*interval,interval);
//Gather results
auto tmp_AB = Serialize_Deserialize_Vector::Serialize(AB);
// cout << "RANK: " << rank << " INTERVAL: "<< interval << " rank*N " << rank*N << " tmp_AB.size() "<<tmp_AB.size() << " " ;
// std::vector<double> tmp(interval*N);
// for(int i = (rank * interval*N),j=0; i < (rank * interval*N)+N; i++, j++){
// tmp[j]=tmp_AB[i];
// cout << tmp[j]<<" ";
// }
// cout << endl;
// std::vector<double> test(N*N);
std::vector<double> tmp_AB = Serialize_Deserialize_Vector::Serialize(AB);
MPI_Gather(&tmp_AB[rank * interval*N], interval * N, MPI_DOUBLE, &tmp_AB[rank*interval*N],
interval * N, MPI_DOUBLE, 0, MCW);
AB=Serialize_Deserialize_Vector::Deserialize(tmp_AB);
if(!rank)
print_matrix(AB);
//Record parallel finish time
MPI_Barrier(MCW);
time2 = MPI_Wtime();
if (!rank){
cout << "made it here!!" <<endl;
//serial computation
serial_version();
//Record serial finish time
time3 = MPI_Wtime();
//Print times
cout << "Problem size " << N << endl;
cout << size << " processors computed in time: " << time2-time1 << endl;
cout << "Serial version computed in time: " << time3-time2 << endl;
cout << "Efficiency of: " << (time3-time2)/((time2-time1)*size) << endl;
//Code to print matrices and results
cout << "Matrix A: " << endl;
myfile << size << " processors computed in time: " << time2-time1 << endl;
myfile << "Serial version computed in time: " << time3-time2 << endl;
myfile << "Matrix A: " << endl;
print_matrix(A);
cout << "multiplied Matrix B:" << endl;
myfile << "multiplied Matrix B:" << endl;
print_matrix(B);
cout << "serial version gives:" << endl;
myfile << "serial version gives:" << endl;
print_matrix(AB_serial);
cout << "gives matrix AB:" << endl;
myfile << "gives matrix AB:" << endl;
print_matrix(AB);
}
}
void determinant()
{
std::vector<std::vector<double> > M = read_in_single_matrix();
int n = M.size();
const double SMALL = 1.0E-30;
double det = 1;
for ( int i = 0; i < n - 1; i++ )
{
int r = i;
double maxM = abs( M[i][i] );
for ( int k = i + 1; k < n; k++ )
{
double val = abs( M[k][i] );
if ( val > maxM )
{
r = k;
maxM = val;
}
}
if ( r != i )
{
for ( int j = i; j < n; j++ ) swap( M[i][j], M[r][j] );
det = -det;
}
double pivot = M[i][i];
if ( abs( pivot ) < SMALL ) {
cout << "Determinant = " << M[0][0] << " for matrix: " <<endl;
myfile << "Determinant = " << M[0][0] << " for matrix: " <<endl;
print_matrix(M);
return;
}
for ( int rows = i + 1; rows < n; rows++ )
{
double multiple = M[rows][i] / pivot;
for ( int j = i; j < n; j++ ) M[rows][j] -= multiple * M[i][j];
}
det *= pivot;
}
det *= M[n-1][n-1];
cout << "Determinant = " << det<< " for matrix: " <<endl;
myfile << "Determinant = " << det<< " for matrix: " <<endl;
print_matrix(M);
}

12
FinalProject/results.txt Normal file
View File

@@ -0,0 +1,12 @@
Reduced Row:
3 2 2 2
0 4.66667 5.66667 0.666667
0 0 -3.71429 3.85714
0 0 0 -1.13462
Determinant = 59 for matrix:
3 2 2 2
0 4.66667 5.66667 0.666667
0 0 -3.71429 3.85714
0 0 0 -1.13462